5D14 | pdb_00005d14

The atomic resolution crystal structure of human IL-8

PDB DOI: https://doi.org/10.2210/pdb5D14/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Komagataella pastoris
Mutation(s): No

Deposited: 2015-08-03 Released: 2015-12-23
Deposition Author(s): Brzezinski, K., Pompeu, Y., Lu, S., Jakoncic, J., Ostrov, D.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.00 Å
R-Value Free:
0.135 (Depositor), 0.140 (DCC)
R-Value Work:
0.120 (DCC)
R-Value Observed:
0.112 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

The atomic resolution crystal structure of human IL-8

Brzezinski, K., Pompeu, Y., Lu, S., Jakoncic, J., Ostrov, D.A.

To be published.

Macromolecule Content

Total Structure Weight: 8.24 kDa
Atom Count: 761
Modeled Residue Count: 70
Deposited Residue Count: 70
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin-8	A	70	Homo sapiens	Mutation(s): 0 Gene Names: CXCL8, IL8
UniProt & NIH Common Fund Data Resources
Find proteins for P10145 (Homo sapiens) Explore P10145 Go to UniProtKB: P10145
PHAROS: P10145 GTEx: ENSG00000169429
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P10145
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.00 Å
R-Value Free: 0.135 (Depositor), 0.140 (DCC)
R-Value Work: 0.120 (DCC)
R-Value Observed: 0.112 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.877	α = 90
b = 39.877	β = 90
c = 89.516	γ = 120

Software Package:

Software Name	Purpose
SHELX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data scaling
MOLREP	phasing
HKL-2000	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2015-12-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-12-23
Type: Initial release
Version 1.1: 2017-11-22
Changes: Derived calculations, Refinement description
Version 1.2: 2024-10-23
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.