Download MendeleyCrystal structure of Trypanosoma cruzi protein in complex with ligand
Yang, Y.Y., Ko, T.P., Zheng, Y.Y., Liu, W.D., Chen, C.C., Guo, R.T.(2016) ACS Chem Biol
5CUX
Crystal structure of N-terminal domain truncated Trypanosoma cruzi Vacuolar Soluble Pyrophosphatases in complex with PPi
- PDB DOI: https://doi.org/10.2210/pdb5CUX/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Trypanosoma cruzi
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-07-25 Released: 2016-03-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.233
- R-Value Work: 0.198
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acidocalcisomal pyrophosphatase | 263 | Trypanosoma cruzi | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q4JH30 (Trypanosoma cruzi) Explore Q4JH30 Go to UniProtKB: Q4JH30 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4JH30 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| POP Query on POP | C [auth A], D [auth A], I [auth B] | PYROPHOSPHATE 2- H2 O7 P2 XPPKVPWEQAFLFU-UHFFFAOYSA-L |  | ||
| PO4 Query on PO4 | E [auth A] F [auth A] G [auth A] H [auth A] J [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.233
- R-Value Work: 0.198
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 122.893 | α = 90 |
| b = 122.893 | β = 90 |
| c = 127.675 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-03-02 Deposition Author(s): Liu, W.D., Yang, Y.Y., Ko, T.P., Zheng, Y.Y., Chen, C.C., Guo, R.T.
Revision History (Full details and data files)
- Version 1.0: 2016-03-02
Type: Initial release - Version 1.1: 2016-03-09
Changes: Data collection - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
