5CUU

Crystal structure of Trypanosoma cruzi Vacuolar Soluble Pyrophosphatases in complex with bisphosphonate inhibitor BPH-1260


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of Trypanosoma cruzi protein in complex with ligand

Yang, Y.Y.Ko, T.P.Zheng, Y.Y.Liu, W.D.Chen, C.C.Guo, R.T.

(2016) ACS Chem Biol 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Acidocalcisomal pyrophosphataseAB414Trypanosoma cruziMutation(s): 0 
Gene Names: C3747_44g24
EC: 3.6.1.1
Find proteins for Q4JH30 (Trypanosoma cruzi)
Explore Q4JH30 
Go to UniProtKB:  Q4JH30
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
4GA
Query on 4GA

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A, B
1-butyl-3-(2-hydroxy-2,2-diphosphonoethyl)-1H-imidazol-3-ium
C9 H19 N2 O7 P2
JCMWHMYRNYPQAZ-UHFFFAOYSA-O
 Ligand Interaction
MLT
Query on MLT

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A, B
D-MALATE
C4 H6 O5
BJEPYKJPYRNKOW-UWTATZPHSA-N
 Ligand Interaction
MG
Query on MG

Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.194 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 100.775α = 90
b = 102.63β = 90
c = 158.834γ = 90
Software Package:
Software NamePurpose
HKL-2000data scaling
CNSrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-03-02
    Type: Initial release
  • Version 1.1: 2016-03-09
    Changes: Data collection