5CU9 | pdb_00005cu9

CANDIDA ALBICANS SUPEROXIDE DISMUTASE 5 (SOD5), APO

• PDB DOI: https://doi.org/10.2210/pdb5CU9/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Candida albicans SC5314
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-07-24 Released: 2016-07-27 
• Deposition Author(s): Waninger-Saroni, J.J., Taylor, A.B., Hart, P.J., Galaleldeen, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.48 Å
• R-Value Free: 
  0.257 (Depositor), 0.258 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.206 (DCC) 
• R-Value Observed: 
  0.207 (Depositor) 

Starting Model: experimental

Literature

CANDIDA ALBICANS SUPEROXIDE DISMUTASE 5 (SOD5), APO

Waninger-Saroni, J.J., Taylor, A.B., Hart, P.J., Galaleldeen, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 17.09 kDa 
• Atom Count: 1,222 
• Modeled Residue Count: 153 
• Deposited Residue Count: 159 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell surface Cu-only superoxide dismutase 5	A	159	Candida albicans SC5314	Mutation(s): 0  Gene Names: SOD5, PGA3, SOD31, CaO19.2060, CaO19.9607 EC: 1.15.1.1
UniProt
Find proteins for Q5AD07 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore Q5AD07  Go to UniProtKB:  Q5AD07

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.48 Å
• R-Value Free:  0.257 (Depositor), 0.258 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.206 (DCC) 
• R-Value Observed: 0.207 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.531	α = 90
b = 37.699	β = 90
c = 102.875	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-07-27 
Deposition Author(s): Waninger-Saroni, J.J., Taylor, A.B., Hart, P.J., Galaleldeen, A.

Revision History  

• Version 1.0: 2016-07-27
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.2: 2024-11-20
  Changes: Structure summary