5CTC

Humanized yeast ACC carboxyltransferase domain bound to tert-butyl 7-[(7-methyl-1H-indazol-5-yl)carbonyl]-2,7-diazaspiro[3.5]nonane-2-carboxylate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of spirocyclic-diamine inhibitors of mammalian acetyl CoA-carboxylase.

Kung, D.W.Griffith, D.A.Esler, W.P.Vajdos, F.F.Mathiowetz, A.M.Doran, S.D.Amor, P.A.Bagley, S.W.Banks, T.Cabral, S.Ford, K.Garcia-Irizarry, C.N.Landis, M.S.Loomis, K.McPherson, K.Niosi, M.Rockwell, K.L.Rose, C.Smith, A.C.Southers, J.A.Tapley, S.Tu, M.Valentine, J.J.

(2015) Bioorg.Med.Chem.Lett. 25: 5352-5356

  • DOI: 10.1016/j.bmcl.2015.09.035
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • A novel series of spirocyclic-diamine based, isoform non-selective inhibitors of acetyl-CoA carboxylase (ACC) is described. These spirodiamine derivatives were discovered by design of a library to mimic the structural rigidity and hydrogen-bonding pa ...

    A novel series of spirocyclic-diamine based, isoform non-selective inhibitors of acetyl-CoA carboxylase (ACC) is described. These spirodiamine derivatives were discovered by design of a library to mimic the structural rigidity and hydrogen-bonding pattern observed in the co-crystal structure of spirochromanone inhibitor I. The lead compound 3.5.1 inhibited de novo lipogenesis in rat hepatocytes, with an IC50 of 0.30 μM.


    Organizational Affiliation

    Structural Biology, Groton, CT 06340, United States.,Worldwide Medicinal Chemistry, Groton, CT 06340, United States.,Primary Pharmacology Group, Groton, CT 06340, United States.,Pharmaceutical Sciences Research Formulations, Pfizer Worldwide Research and Development, Cambridge, MA 02139, United States.,Worldwide Medicinal Chemistry, Groton, CT 06340, United States. Electronic address: daniel.w.kung@pfizer.com.,Worldwide Medicinal Chemistry, Cambridge, MA 02139, United States. Electronic address: david.a.griffith@pfizer.com.,Cardiovascular, Metabolic and Endocrine Diseases Research Unit, Cambridge, MA 02139, United States.,Cardiovascular, Metabolic and Endocrine Diseases Research Unit, Groton, CT 06340, United States.,Worldwide Medicinal Chemistry, Cambridge, MA 02139, United States.,Pharmacokinetics, Dynamics and Metabolism, Groton, CT 06340, United States.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Acetyl-CoA carboxylase
A, B, C
769Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 9 
Gene Names: ACC1 (ABP2, FAS3, MTR7)
EC: 6.4.1.2
Find proteins for Q00955 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q00955
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
57K
Query on 57K

Download SDF File 
Download CCD File 
A, B, C
tert-butyl 7-[(7-methyl-1H-indazol-5-yl)carbonyl]-2,7-diazaspiro[3.5]nonane-2-carboxylate
C21 H28 N4 O3
YEEUURWABWXHDJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.173 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 247.272α = 90.00
b = 122.705β = 94.30
c = 146.429γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
BUSTER-TNTrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2015-07-23 
  • Released Date: 2015-10-14 
  • Deposition Author(s): Vajdos, F.F.

Revision History 

  • Version 1.0: 2015-10-14
    Type: Initial release
  • Version 1.1: 2015-11-11
    Type: Database references