5CON

X-ray crystal structure of wild type HIV-1 protease in complex with GRL-015


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir.

Aoki, M.Hayashi, H.Yedidi, R.S.Martyr, C.D.Takamatsu, Y.Aoki-Ogata, H.Nakamura, T.Nakata, H.Das, D.Yamagata, Y.Ghosh, A.K.Mitsuya, H.

(2015) J.Virol. 90: 2180-2194


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HIV-1 protease
A, B
99Human immunodeficiency virus 1Mutation(s): 1 
Gene Names: pol
Find proteins for G0X8E8 (Human immunodeficiency virus 1)
Go to UniProtKB:  G0X8E8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
52W
Query on 52W

Download SDF File 
Download CCD File 
B
(3R,3aS,4S,7aS)-3-hydroxyhexahydro-4H-furo[2,3-b]pyran-4-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate
GRL-015
C29 H40 N2 O9 S
BCSIHXKFONPDJO-QWGZUQTQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.221 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 62.786α = 90.00
b = 62.786β = 90.00
c = 81.907γ = 120.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement
MOLREPphasing
MOLREPphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited States--

Revision History 

  • Version 1.0: 2016-01-13
    Type: Initial release
  • Version 1.1: 2016-02-24
    Type: Database references
  • Version 1.2: 2017-09-27
    Type: Author supporting evidence, Data collection, Database references, Derived calculations