5CL1

Complex structure of Norrin with human Frizzled 4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.310 
  • R-Value Work: 0.262 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis of the Norrin-Frizzled 4 interaction.

Shen, G.Ke, J.Wang, Z.Cheng, Z.Gu, X.Wei, Y.Melcher, K.Xu, H.E.Xu, W.

(2015) Cell Res. 25: 1078-1081


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Maltose-binding periplasmic protein,Norrin
A, B
483Homo sapiensEscherichia coli O157:H7
This entity is chimeric
Mutation(s): 0 
Gene Names: NDP (EVR2), malE
Find proteins for Q00604 (Homo sapiens)
Go to Gene View: NDP
Go to UniProtKB:  Q00604
Find proteins for P0AEY0 (Escherichia coli O157:H7)
Go to UniProtKB:  P0AEY0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Frizzled-4
C, D
131Homo sapiensMutation(s): 0 
Gene Names: FZD4
Find proteins for Q9ULV1 (Homo sapiens)
Go to Gene View: FZD4
Go to UniProtKB:  Q9ULV1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.310 
  • R-Value Work: 0.262 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 143.291α = 90.00
b = 150.589β = 90.00
c = 92.320γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHASERphasing
REFMACrefinement
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-08-12
    Type: Initial release
  • Version 1.1: 2015-09-16
    Type: Database references