5CDJ | pdb_00005cdj

apical domain of chloroplast chaperonin 60a

• PDB DOI: https://doi.org/10.2210/pdb5CDJ/pdb

• Classification: CHAPERONE
• Organism(s): Chlamydomonas reinhardtii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-07-04 Released: 2016-07-13 
• Deposition Author(s): Zhang, S., Yu, F., Liu, C., Gao, F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free: 
  0.211 (Depositor), 0.212 (DCC) 
• R-Value Work: 
  0.186 (Depositor), 0.187 (DCC) 
• R-Value Observed: 
  0.187 (Depositor) 

Literature

Functional Partition of Cpn60 alpha and Cpn60 beta Subunits in Substrate Recognition and Cooperation with Co-chaperonins

Zhang, S., Zhou, H., Yu, F., Gao, F., He, J., Liu, C.

(2016) Mol Plant 9: 1210-1213

• PubMed: 27179919 
• DOI: https://doi.org/10.1016/j.molp.2016.04.019
• Primary Citation Related Structures: 
  5CDJ, 5CDK

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Organizational Affiliation: 
• State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100101, China.
Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201204, China.
Center for Molecular Systems Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China. Electronic address: [e-mail].

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 40.75 kDa 
• Atom Count: 3,155 
• Modeled Residue Count: 365 
• Deposited Residue Count: 372 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RuBisCO large subunit-binding protein subunit alpha, chloroplastic	A, B	186	Chlamydomonas reinhardtii	Mutation(s): 0
UniProt
Find proteins for Q42694 (Chlamydomonas reinhardtii) Explore Q42694  Go to UniProtKB:  Q42694

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free:  0.211 (Depositor), 0.212 (DCC) 
• R-Value Work:  0.186 (Depositor), 0.187 (DCC) 
• R-Value Observed: 0.187 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33.912	α = 110.02
b = 53.024	β = 106.32
c = 59.311	γ = 91.42

Software Package:

Software Name	Purpose
PHENIX	refinement
CNS	data reduction
CNS	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-07-13 
Deposition Author(s): Zhang, S., Yu, F., Liu, C., Gao, F.

Revision History  

• Version 1.0: 2016-07-13
  Type: Initial release
  
• Version 1.1: 2017-05-17
  Changes: Database references
• Version 1.2: 2024-03-20
  Changes: Data collection, Database references