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Download EndnoteCrystal structure of E. coli YaaA, a member of the DUF328/UPF0246 family
Prahlad, J., Wilson, M.A.To be published.
5CAJ
Crystal structure of E. coli YaaA, a member of the DUF328/UPF0246 family
- DOI: 10.2210/pdb5CAJ/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Escherichia coli (strain K12)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2015-06-29 Released: 2016-02-24
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.176
- R-Value Work: 0.151
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| UPF0246 protein YaaA | A, B | 278 | Escherichia coli (strain K12) | Mutation(s): 0 Gene Names: yaaA |
Find proteins for P0A8I3 (Escherichia coli (strain K12)) Go to UniProtKB: P0A8I3 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| BEN Query on BEN | A | BENZAMIDINE C7 H8 N2 PXXJHWLDUBFPOL-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.176
- R-Value Work: 0.151
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 45.664 | α = 90.00 |
| b = 77.060 | β = 90.00 |
| c = 184.161 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHENIX | phasing |
| PHENIX | refinement |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2015-06-29
- Released Date: 2016-02-24
- Deposition Author(s): Prahlad, J., Lin, J., Wilson, M.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences | United States | R01GM092999 |
Revision History
- Version 1.0: 2016-02-24
Type: Initial release - Version 1.1: 2017-09-20
Type: Author supporting evidence, Derived calculations
