5C7I

Mouse sperm Glyceraldehyde-3-phosphate dehydrogenase: apo enzyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0098 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural analyses to identify selective inhibitors of glyceraldehyde 3-phosphate dehydrogenase-S, a sperm-specific glycolytic enzyme.

Danshina, P.V.Qu, W.Temple, B.R.Rojas, R.J.Miley, M.J.Machius, M.Betts, L.O'Brien, D.A.

(2016) Mol. Hum. Reprod. 22: 410-426

  • DOI: 10.1093/molehr/gaw016
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Detailed structural comparisons of sperm-specific glyceraldehyde 3-phosphate dehydrogenase, spermatogenic (GAPDHS) and the somatic glyceraldehyde 3-phosphate dehydrogenase (GAPDH) isozyme should facilitate the identification of selective GAPDHS inhib ...

    Detailed structural comparisons of sperm-specific glyceraldehyde 3-phosphate dehydrogenase, spermatogenic (GAPDHS) and the somatic glyceraldehyde 3-phosphate dehydrogenase (GAPDH) isozyme should facilitate the identification of selective GAPDHS inhibitors for contraceptive development.


    Organizational Affiliation

    R.L. Juliano Structural Bioinformatics Core Facility, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA.,Macromolecular X-Ray Crystallography Core Facility, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA.,Department of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA Present address: Dart NeuroScience, LLC, San Diego, CA 92131, USA.,Department of Cell Biology and Physiology, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA.,Macromolecular X-Ray Crystallography Core Facility, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA Present address: 230 Jamestown Road, Pittsboro, NC 27312, USA.,Department of Cell Biology and Physiology, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA dao@med.unc.edu.,Department of Cell Biology and Physiology, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA Present address: Key Laboratory of Public Health Safety, Ministry of Education, Department of Environmental Health, School of Public Health, Fudan University, Shanghai 200032, China.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glyceraldehyde-3-phosphate dehydrogenase, testis-specific
O, R
333Mus musculusMutation(s): 0 
Gene Names: Gapdhs (Gapd-s, Gapds)
EC: 1.2.1.12
Find proteins for Q64467 (Mus musculus)
Go to UniProtKB:  Q64467
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSD
Query on CSD
O, R
L-PEPTIDE LINKINGC3 H7 N O4 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0098 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.178 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 86.717α = 90.00
b = 86.717β = 90.00
c = 158.358γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
PHENIXphasing
HKL-2000data scaling
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-03-09
    Type: Initial release
  • Version 1.1: 2016-06-15
    Type: Database references