5C71

The structure of Aspergillus oryzae a-glucuronidase complexed with glycyrrhetinic acid monoglucuronide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.190 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history



Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glucuronidase
A, B, C, D
637Aspergillus oryzaeMutation(s): 2 
Gene Names: Pgus
EC: 3.2.1.25
UniProt
Find proteins for A7XS03 (Aspergillus oryzae)
Explore A7XS03 
Go to UniProtKB:  A7XS03
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA7XS03
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.190 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 96.068α = 88.27
b = 96.231β = 74.36
c = 96.192γ = 71.13
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data processing
AMoREphasing
Cootmodel building
HKL-2000data reduction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-29
    Type: Initial release
  • Version 1.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Database references, Derived calculations, Structure summary
  • Version 1.2: 2023-03-01
    Changes: Database references, Structure summary
  • Version 1.3: 2023-11-29
    Changes: Data collection, Refinement description