5C5N

Structure of SARS-3CL protease complex with a phenyl-beta-alanyl (R,S)-N-decalin type inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.321 
  • R-Value Work: 0.290 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Fused-ring structure of N-decalin as a novel scaffold for SARS 3CL protease inhibitors

Shimamoto, Y.Hattori, H.Kobayashi, K.Teruya, K.Sanjho, A.Nakagawa, A.Yamashita, E.Akaji, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3C-like proteinase
A
306Human SARS coronavirusMutation(s): 1 
Gene Names: rep
Find proteins for P0C6X7 (Human SARS coronavirus)
Go to UniProtKB:  P0C6X7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SLH
Query on SLH

Download SDF File 
Download CCD File 
A
(2S)-3-(1H-imidazol-5-yl)-2-({[(3R,4aS,8aR)-2-(N-phenyl-beta-alanyl)decahydroisoquinolin-3-yl]methyl}amino)propanal
C25 H35 N5 O2
HCMRRQNNHUOUJM-NVXDSCFRSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.321 
  • R-Value Work: 0.290 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 107.801α = 90.00
b = 82.091β = 104.35
c = 53.266γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
SCALEPACKdata reduction
DENZOdata reduction
MOLREPphasing
DENZOdata collection
MOLREPmodel building
Cootmodel building
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-06-22
    Type: Initial release
  • Version 1.1: 2020-01-29
    Type: Data collection, Derived calculations