Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 68564.42 
• Atom Count: 4560 
• Residue Count: 632 
• Unique protein chains: 1

5C5I

Crystal structure of NADP-dependent dehydrogenase from Rhodobacter sphaeroides

• DOI: 10.2210/pdb5C5I/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2015-06-19 Released: 2015-07-01 
• Deposition Author(s): Kowiel, M., Gasiorowska, O.A., Shabalin, I.G., Handing, K.B., Porebski, P.J., Cymborowski, M., Al Obaidi, N.F., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)
• Funding Organization(s): National Institutes of Health 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.2 Å
• R-Value Free: 0.252 
• R-Value Work: 0.195 

Literature

Crystal structures of NADP-dependent dehydrogenase from Rhodobacter sphaeroides

Kowiel, M., Gasiorowska, O.A., Shabalin, I.G., Handing, K.B., Porebski, P.J., Bonanno, J., Almo, S.C., Minor, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
NADP-dependent dehydrogenase	A, B	316	Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)	Mutation(s): 0  EC: 1.1.1.79, 1.1.1.81
Find proteins for Q3IWN8 (Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)) Go to UniProtKB:  Q3IWN8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.2 Å
• R-Value Free: 0.252 
• R-Value Work: 0.195 
• Space Group: C 1 2 1
• Diffraction Data DOI: 
  10.18430/M3KS38 Protein Diffraction

Unit Cell:

Length (Å)	Angle (°)
a = 110.048	α = 90.00
b = 80.085	β = 93.69
c = 61.330	γ = 90.00

Software Package:

Software Name	Purpose
HKL-3000	data reduction
BLU-MAX	data collection
MOLREP	phasing
HKL-3000	data scaling
REFMAC	refinement
HKL-3000	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2015-06-19 
• Released Date: 2015-07-01 
• Deposition Author(s): Kowiel, M., Gasiorowska, O.A., Shabalin, I.G., Handing, K.B., Porebski, P.J., Cymborowski, M., Al Obaidi, N.F., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

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Funding Organization	Location	Grant Number
National Institutes of Health	United States	--

Revision History 

• Version 1.0: 2015-07-01
  Type: Initial release
• Version 1.1: 2017-11-22
  Type: Database references, Derived calculations, Refinement description, Source and taxonomy