5C56

Crystal structure of USP7/HAUSP in complex with ICP0

• PDB DOI: https://doi.org/10.2210/pdb5C56/pdb

• Classification: HYDROLASE
• Organism(s): Human alphaherpesvirus 1, Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-06-19 Released: 2015-07-08 
• Deposition Author(s): Cheng, J., Li, Z., Gong, R., Fang, J., Yang, Y., Sun, C., Yang, H., Xu, Y.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.69 Å
• R-Value Free: 0.263 
• R-Value Work: 0.215 
• R-Value Observed: 0.219 

Starting Model: experimental

Literature

Molecular mechanism for the substrate recognition of USP7.

Cheng, J., Li, Z., Gong, R., Fang, J., Yang, Y., Sun, C., Yang, H., Xu, Y.

(2015) Protein Cell 6: 849-852

• PubMed: 26210801 
• DOI: https://doi.org/10.1007/s13238-015-0192-y
• Primary Citation of Related Structures:  
  5C56

---

Organizational Affiliation: 

Key Laboratory of Molecular Medicine, Ministry of Education, Department of Systems Biology for Medicine, School of Basic Medical Sciences, Shanghai Medical College of Fudan University, Shanghai, 200032, China.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 66.34 kDa 
• Atom Count: 4,446 
• Modelled Residue Count: 541 
• Deposited Residue Count: 569 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin E3 ligase ICP0	A [auth B]	21	Human alphaherpesvirus 1	Mutation(s): 0  EC: 2.3.2.27
UniProt
Find proteins for P08393 (Human herpesvirus 1 (strain 17)) Explore P08393  Go to UniProtKB:  P08393

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin carboxyl-terminal hydrolase 7	B [auth A]	548	Homo sapiens	Mutation(s): 0  Gene Names: USP7, HAUSP EC: 3.4.19.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q93009 (Homo sapiens) Explore Q93009  Go to UniProtKB:  Q93009
PHAROS:  Q93009 GTEx:  ENSG00000187555

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.69 Å
• R-Value Free: 0.263 
• R-Value Work: 0.215 
• R-Value Observed: 0.219 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.879	α = 90
b = 80.378	β = 90
c = 151.149	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
HKL-2000	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-07-08 
Deposition Author(s): Cheng, J., Li, Z., Gong, R., Fang, J., Yang, Y., Sun, C., Yang, H., Xu, Y.

Revision History  

• Version 1.0: 2015-07-08
  Type: Initial release
  
• Version 1.1: 2015-11-04
  Changes: Database references
• Version 1.2: 2015-11-11
  Changes: Database references
• Version 1.3: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description