5C2B

anti-CXCL13 parental scFv - 3B4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4049 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Optimization of a scFv-based biotherapeutic by CDR side-chain clash repair

Tu, C.Terrabube, V.Tam, A.Stochaj, W.Fennell, B.Lin, L.Stahl, M.LaVallie, E.Somers, W.Finlay, W.Mosyak, L.Bard, J.Cunningham, O.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
scFv 3B4 heavy chain
H
142N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
3B4 light chain
L
112N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
H, L
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4049 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.179 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 131.900α = 90.00
b = 133.500β = 90.00
c = 44.900γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
MOLREPphasing
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-11-04
    Type: Initial release
  • Version 1.1: 2017-11-01
    Type: Author supporting evidence, Derived calculations