Download Mendeley
Download EndnoteThe crystal structure of endo-arabinase from Bacteroides thetaiotaomicron VPI-5482
Tan, K., Cuff, M., Joachimiak, G., Endres, M., Joachimiak, A.To be published.
5C0P
The crystal structure of endo-arabinase from Bacteroides thetaiotaomicron VPI-5482
- DOI: 10.2210/pdb5C0P/pdb
- Classification: HYDROLASE
- Organism(s): Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2015-06-12 Released: 2015-07-01
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.532 Å
- R-Value Free: 0.164
- R-Value Work: 0.149
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Endo-arabinase | A | 298 | Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) | Mutation(s): 0 |
Find proteins for Q8A6K8 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)) Go to UniProtKB: Q8A6K8 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | A | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| TRS Query on TRS | A | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.532 Å
- R-Value Free: 0.164
- R-Value Work: 0.149
- Space Group: P 43
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 83.804 | α = 90.00 |
| b = 83.804 | β = 90.00 |
| c = 43.366 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data reduction |
| PHENIX | refinement |
| HKL-3000 | data scaling |
| MLPHARE | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2015-06-12
- Released Date: 2015-07-01
- Deposition Author(s): Tan, K., Cuff, M., Joachimiak, G., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences | United States | GM094585 |
Revision History
- Version 1.0: 2015-07-01
Type: Initial release - Version 1.1: 2017-09-27
Type: Advisory, Author supporting evidence, Derived calculations, Source and taxonomy, Structure summary
