5BZW

Crystal Structure of PCDN-27B, an antibody from the PCDN family of HIV-1 antibodies


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Early Antibody Lineage Diversification and Independent Limb Maturation Lead to Broad HIV-1 Neutralization Targeting the Env High-Mannose Patch.

MacLeod, D.T.Choi, N.M.Briney, B.Garces, F.Ver, L.S.Landais, E.Murrell, B.Wrin, T.Kilembe, W.Liang, C.H.Ramos, A.Bian, C.B.Wickramasinghe, L.Kong, L.Eren, K.Wu, C.Y.Wong, C.H.Kosakovsky Pond, S.L.Wilson, I.A.Burton, D.R.Poignard, P.

(2016) Immunity 44: 1215-1226


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2B3 HIV Antibody light chain
A
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
2B3 HIV Antibody heavy chain
B
232N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.233 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 89.354α = 90.00
b = 89.354β = 90.00
c = 211.301γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-05-25
    Type: Initial release
  • Version 1.1: 2016-07-27
    Type: Data collection
  • Version 1.2: 2018-10-10
    Type: Data collection, Database references, Derived calculations, Structure summary