5BZ0

Crystal structure of IBV papain-like protease PLpro C101S mutant in complex with ubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of IBV papain-like protease PLpro C101S mutant in complex with ubiquitin

Kong, L.Y.Yan, L.M.Zhang, Y.Rao, Z.H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Replicase polyprotein 1ab
A
313Avian infectious bronchitis virus (strain Beaudette)Gene Names: rep
EC: 3.1.13.-, 3.1.-.-, 3.6.4.12, 3.4.22.-, 3.6.4.13, 2.1.1.-, 2.7.7.48
Find proteins for P0C6Y1 (Avian infectious bronchitis virus (strain Beaudette))
Go to UniProtKB:  P0C6Y1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-40S ribosomal protein S27a
B
76Bos taurusGene Names: RPS27A (UBA80, UBCEP1)
Find proteins for P62992 (Bos taurus)
Go to Gene View: RPS27A
Go to UniProtKB:  P62992
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.191 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 63.058α = 90.00
b = 74.812β = 90.00
c = 95.502γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-2000data scaling
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
National Natural Science Foundation of ChinaChina81330036 and 81322023
National Major Project (973 Program)China2014CB542800
Tsinghua University Initiative Scientific Research ProgramChina20141080146

Revision History 

  • Version 1.0: 2016-06-15
    Type: Initial release