5BYW | pdb_00005byw

Crystal structure of engineered trifunctional CtCEL5E

PDB DOI: https://doi.org/10.2210/pdb5BYW/pdb

Classification: HYDROLASE
Organism(s): Acetivibrio thermocellus ATCC 27405
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2015-06-11 Released: 2016-06-15
Deposition Author(s): Lin, W.L., Liang, P.H., Ho, M.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.260 (Depositor), 0.263 (DCC)
R-Value Work:
0.209 (Depositor), 0.214 (DCC)
R-Value Observed:
0.211 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of engineered trifunctional CtCel5E

Lin, W.L., Liang, P.H., Ho, M.C.

To be published.

Macromolecule Content

Total Structure Weight: 236.86 kDa
Atom Count: 13,396
Modeled Residue Count: 1,596
Deposited Residue Count: 2,070
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endoglucanase H	A, B, C, D, E	414	Acetivibrio thermocellus ATCC 27405	Mutation(s): 7 Gene Names: celH, Cthe_1472 EC: 3.2.1.4
UniProt
Find proteins for P16218 (Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)) Explore P16218 Go to UniProtKB: P16218
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P16218
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.260 (Depositor), 0.263 (DCC)
R-Value Work: 0.209 (Depositor), 0.214 (DCC)
R-Value Observed: 0.211 (Depositor)

Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 222.325	α = 90
b = 222.325	β = 90
c = 207.895	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-06-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-06-15
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.