Download MendeleyCrystal Structure of 3-hydroxyacyl-ACP dehydratase (FabZ) from Yersinia pestis with glycerol bound
McGillick, B., Kumaran, D., Swaminathan, S.To be published.
5BUX
Crystal Structure of 3-hydroxyacyl-ACP dehydratase (FabZ) from Yersinia pestis with glycerol bound
- PDB DOI: https://doi.org/10.2210/pdb5BUX/pdb
- Classification: LYASE
- Organism(s): Yersinia pestis KIM10+
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-06-04 Released: 2016-06-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.185
- R-Value Work: 0.155
- R-Value Observed: 0.157
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ | 191 | Yersinia pestis KIM10+ | Mutation(s): 0 Gene Names: fabZ, YPA_0531 EC: 4.2.1.59 |  | |
UniProt | |||||
Find proteins for Q1CAM3 (Yersinia pestis bv. Antiqua (strain Antiqua)) Explore Q1CAM3 Go to UniProtKB: Q1CAM3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1CAM3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| SCN Query on SCN | E [auth A], F [auth B], G [auth B] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.185
- R-Value Work: 0.155
- R-Value Observed: 0.157
- Space Group: P 63
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.76 | α = 90 |
| b = 104.76 | β = 90 |
| c = 87.961 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2016-06-08 Deposition Author(s): McGillick, B., Kumaran, D., Swaminathan, S.
Revision History (Full details and data files)
- Version 1.0: 2016-06-08
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
