5BUT

Crystal structure of inactive conformation of KtrAB K+ transporter


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.97 Å
  • R-Value Free: 0.339 
  • R-Value Work: 0.325 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Dissecting the Molecular Mechanism of Nucleotide-Dependent Activation of the KtrAB K+ Transporter.

Szollosi, A.Vieira-Pires, R.S.Teixeira-Duarte, C.M.Rocha, R.Morais-Cabral, J.H.

(2016) PLoS Biol 14: e1002356-e1002356

  • DOI: https://doi.org/10.1371/journal.pbio.1002356
  • Primary Citation of Related Structures:  
    5BUT

  • PubMed Abstract: 

    KtrAB belongs to the Trk/Ktr/HKT superfamily of monovalent cation (K+ and Na+) transport proteins that closely resemble K+ channels. These proteins underlie a plethora of cellular functions that are crucial for environmental adaptation in plants, fungi, archaea, and bacteria. The activation mechanism of the Trk/Ktr/HKT proteins remains unknown. It has been shown that ATP stimulates the activity of KtrAB while ADP does not. Here, we present X-ray structural information on the KtrAB complex with bound ADP. A comparison with the KtrAB-ATP structure reveals conformational changes in the ring and in the membrane protein. In combination with a biochemical and functional analysis, we uncover how ligand-dependent changes in the KtrA ring are propagated to the KtrB membrane protein and conclude that, despite their structural similarity, the activation mechanism of KtrAB is markedly different from the activation mechanism of K+ channels.


  • Organizational Affiliation

    IBMC, Instituto de Biologia Molecular e Celular, Universidade do Porto, Porto, Portugal.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ktr system potassium uptake protein A,Ktr system potassium uptake protein AA,
B [auth C],
C [auth E],
D [auth G]
288Bacillus subtilisMutation(s): 1 
Gene Names: ktrAyuaABSU31090
Membrane Entity: Yes 
UniProt
Find proteins for O32080 (Bacillus subtilis (strain 168))
Explore O32080 
Go to UniProtKB:  O32080
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO32080
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Ktr system potassium uptake protein BE [auth I],
F [auth J],
G [auth K],
H [auth L]
445Bacillus subtilisMutation(s): 0 
Gene Names: ktrByubGBSU31100
Membrane Entity: Yes 
UniProt
Find proteins for O32081 (Bacillus subtilis (strain 168))
Explore O32081 
Go to UniProtKB:  O32081
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO32081
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.97 Å
  • R-Value Free: 0.339 
  • R-Value Work: 0.325 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 307.06α = 90
b = 79.41β = 98.1
c = 205.65γ = 90
Software Package:
Software NamePurpose
SCALAdata scaling
PDB_EXTRACTdata extraction
CNSrefinement
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
FCTPortugalFCOMP-01-0124-FEDER-028115 (PTDC/BBB-BEP/2017/2012)

Revision History  (Full details and data files)

  • Version 1.0: 2016-01-27
    Type: Initial release
  • Version 1.1: 2024-01-10
    Changes: Data collection, Database references, Refinement description