5BU9

Crystal structure of Beta-N-acetylhexosaminidase from Beutenbergia cavernae DSM 12333


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.255 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of Beta-N-acetylhexosaminidase from Beutenbergia cavernae DSM 12333

Chang, C.Tan, K.Li, H.Endres, M.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-N-acetylhexosaminidase
A, B
340Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)Mutation(s): 0 
EC: 3.2.1.52
Find proteins for C5C3W0 (Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432))
Go to UniProtKB:  C5C3W0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.255 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.158 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 146.510α = 90.00
b = 146.510β = 90.00
c = 85.487γ = 120.00
Software Package:
Software NamePurpose
Cootmodel building
PDB_EXTRACTdata extraction
PHENIXrefinement
SCALEPACKdata scaling
HKL-3000phasing
SBC-Collectdata collection
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-06-17
    Type: Initial release