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Download EndnoteCrystal structure of the ectodomain from a LDLR close homologue in complex with its physiological ligand.
Hirai, H., Yasui, N., Yamashita, K., Tabata, S., Yamamoto, M., Takagi, J., Nogi, T.To be published.
5B4Y
Crystal structure of the LA12 fragment of ApoER2
- DOI: 10.2210/pdb5B4Y/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Deposited: 2016-04-20 Released: 2017-04-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.247
- R-Value Work: 0.210
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.247
- R-Value Work: 0.210
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 31.162 | α = 90.00 |
| b = 41.780 | β = 90.00 |
| c = 55.063 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| REFMAC | refinement |
| Aimless | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Deposited Date: 2016-04-20
- Released Date: 2017-04-26
- Deposition Author(s): Nogi, T., Tabata, S., Hirai, H., Yasui, N., Takagi, J.
