Download MendeleyStructure and function of copper nitrite reductase
Nojiri, M.(2016) Metalloenzymes In Denitrification: Applications And Environmental Impacts : 91-113
5B1K
Crystal structure of the chloride-bound form of blue copper nitrite reductase
- DOI: 10.2210/pdb5B1K/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Achromobacter xylosoxidans
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-12-04 Released: 2016-11-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.173
- R-Value Work: 0.149
- R-Value Observed: 0.151
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Copper-containing nitrite reductase | A | 337 | Achromobacter xylosoxidans | Mutation(s): 0 Gene Names: nir, nirK, ERS451415_02178 EC: 1.7.2.1 |  |
Find proteins for O68601 (Alcaligenes xylosoxydans xylosoxydans) Explore O68601 Go to UniProtKB: O68601 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Query on PG4 | A | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | Ligand Interaction | |
| CU Query on CU | A | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.173
- R-Value Work: 0.149
- R-Value Observed: 0.151
- Space Group: P 63
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.703 | α = 90 |
| b = 104.703 | β = 90 |
| c = 63.073 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Deposited Date: 2015-12-04
- Released Date: 2016-11-23 Deposition Author(s): Nojiri, M.
