5B0V

Crystal Structure of Marburg virus VP40 Dimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of Marburg Virus VP40 Reveals a Broad, Basic Patch for Matrix Assembly and a Requirement of the N-Terminal Domain for Immunosuppression

Oda, S.Noda, T.Wijesinghe, K.J.Halfmann, P.Bornholdt, Z.A.Abelson, D.M.Armbrust, T.Stahelin, R.V.Kawaoka, Y.Saphire, E.O.

(2015) J.Virol. 90: 1839-1848


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Matrix protein VP40
A, B
317Lake Victoria marburgvirus (strain Musoke-80)Mutation(s): 0 
Gene Names: VP40
Find proteins for P35260 (Lake Victoria marburgvirus (strain Musoke-80))
Go to UniProtKB:  P35260
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EOH
Query on EOH

Download SDF File 
Download CCD File 
B
ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.202 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 95.810α = 90.00
b = 107.310β = 90.00
c = 127.650γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
HKL-2000data reduction
Auto-Rickshawphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-01-20
    Type: Initial release
  • Version 1.1: 2016-03-09
    Type: Database references