5AYP | pdb_00005ayp

Crystal structure of Bacillus stearothermophilus Farnesyl pyrophosphate synthase

PDB DOI: https://doi.org/10.2210/pdb5AYP/pdb

Classification: TRANSFERASE
Organism(s): Geobacillus stearothermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-08-26 Released: 2016-09-14
Deposition Author(s): Makabe, K., Kijima, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free:
0.252 (Depositor), 0.250 (DCC)
R-Value Work:
0.211 (Depositor), 0.220 (DCC)
R-Value Observed:
0.213 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Bacillus stearothermophilus Farnesyl pyrophosphate synthase

Makabe, K., Kijima, T.

To be published.

Macromolecule Content

Total Structure Weight: 64.71 kDa
Atom Count: 4,029
Modeled Residue Count: 522
Deposited Residue Count: 594
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Farnesyl diphosphate synthase	A, B	297	Geobacillus stearothermophilus	Mutation(s): 0 EC: 2.5.1.10
UniProt
Find proteins for Q08291 (Geobacillus stearothermophilus) Explore Q08291 Go to UniProtKB: Q08291
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q08291
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.31 Å
R-Value Free: 0.252 (Depositor), 0.250 (DCC)
R-Value Work: 0.211 (Depositor), 0.220 (DCC)
R-Value Observed: 0.213 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.015	α = 90
b = 95.156	β = 90
c = 103.349	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Coot	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-09-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-09-14
Type: Initial release
Version 1.1: 2020-02-26
Changes: Data collection, Derived calculations
Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.