5AYG

Crystal Structure of the Human ROR gamma Ligand Binding Domain With 3g


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

SAR Exploration Guided by LE and Fsp(3): Discovery of a Selective and Orally Efficacious ROR gamma Inhibitor

Hirata, K.Kotoku, M.Seki, N.Maeba, T.Maeda, K.Hirashima, S.Sakai, T.Obika, S.Hori, A.Hase, Y.Yamaguchi, T.Katsuda, Y.Hata, T.Miyagawa, N.Arita, K.Nomura, Y.Asahina, K.Aratsu, Y.Kamada, M.Adachi, T.Noguchi, M.Doi, S.Crowe, P.Bradley, E.Steensma, R.Tao, H.Fenn, M.Babine, R.Li, X.Thacher, S.Hashimoto, H.Shiozaki, M.

(2016) Acs Med.Chem.Lett. 7: 23-27

  • DOI: 10.1021/acsmedchemlett.5b00253

  • PubMed Abstract: 
  • A novel series of RORγ inhibitors was identified starting with the HTS hit 1. After SAR investigation based on a prospective consideration of two drug-likeness metrics, ligand efficiency (LE) and fraction of sp(3) carbon atoms (Fsp(3)), significant i ...

    A novel series of RORγ inhibitors was identified starting with the HTS hit 1. After SAR investigation based on a prospective consideration of two drug-likeness metrics, ligand efficiency (LE) and fraction of sp(3) carbon atoms (Fsp(3)), significant improvement of metabolic stability as well as reduction of CYP inhibition was observed, which finally led to discovery of a selective and orally efficacious RORγ inhibitor 3z.


    Organizational Affiliation

    Chemical Research Laboratories, Biological Pharmacological Research Laboratories, Drug Metabolism & Pharmacokinetics Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc. , 1-1, Murasaki-cho, Takatsuki, Osaka 569-1125, Japan.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nuclear receptor ROR-gamma
A, B
258Homo sapiensMutation(s): 0 
Gene Names: RORC (NR1F3, RORG, RZRG)
Find proteins for P51449 (Homo sapiens)
Go to Gene View: RORC
Go to UniProtKB:  P51449
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
4LQ
Query on 4LQ

Download SDF File 
Download CCD File 
A, B
3-[5-(2-cyclohexylethyl)-4-ethyl-1,2,4-triazol-3-yl]-N-naphthalen-1-yl-propanamide
C25 H32 N4 O
SZWIGRNIVUKPOZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.184 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 99.240α = 90.00
b = 99.240β = 90.00
c = 127.840γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-03-02
    Type: Initial release