5AXW

Crystal structure of Staphylococcus aureus Cas9 in complex with sgRNA and target DNA (TTGGGT PAM)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of Staphylococcus aureus Cas9

Nishimasu, H.Cong, L.Yan, W.X.Ran, F.A.Zetsche, B.Li, Y.Kurabayashi, A.Ishitani, R.Zhang, F.Nureki, O.

(2015) Cell 162: 1-14


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CRISPR-associated endonuclease Cas9
A
1056Staphylococcus aureusMutations: C949A, N583A
Gene Names: cas9
EC: 3.1.-.-
Find proteins for J7RUA5 (Staphylococcus aureus)
Go to UniProtKB:  J7RUA5
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (73-MER)B73Staphylococcus aureus
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (28-MER)C28Staphylococcus aureus
Entity ID: 4
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*TP*GP*GP*GP*TP*AP*G)-3')D8Staphylococcus aureus
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

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B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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B, D
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.203 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 67.596α = 90.00
b = 345.664β = 90.00
c = 98.052γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-09-02
    Type: Initial release