5AQ0

The structure of the Transthyretin-like domain of the first catalytic domain of the HUMAN Carboxypeptidase D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.95 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.153 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The Structure of the Ttldomain of the Human Carboxypeptidase D

Gallego, P.Garcia-Pardo, J.Berenguer, E.Lorenzo, J.Aviles, F.X.Ventura, S.Reverter, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CARBOXYPEPTIDASE D
A, B
82Homo sapiensMutation(s): 0 
Gene Names: CPD
EC: 3.4.17.22
Find proteins for O75976 (Homo sapiens)
Go to Gene View: CPD
Go to UniProtKB:  O75976
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.95 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.153 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 39.773α = 90.00
b = 46.051β = 90.18
c = 42.730γ = 90.00
Software Package:
Software NamePurpose
CCP4Idata scaling
XDSdata reduction
REFMACrefinement
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-09-28
    Type: Initial release