4X8W

dsRBD3 of Loquacious


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.647 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of the dsRBD3 of Loquacious reveals features for dimerization and Dicer1-interaction

Jakob, L.Treiber, T.Treiber, N.Stotz, M.Meister, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Loquacious, isoform B
A, B, C, D, E, F, G
75Drosophila melanogasterMutation(s): 0 
Gene Names: loqs (cg6866, Dmel\CG6866, dRax, loq, LOQS, Loqs, Loqs-PD, LqPD, R3D1, r3d1, R3D1-L, R3D1-S, TRBP)
Find proteins for Q9VJY9 (Drosophila melanogaster)
Go to UniProtKB:  Q9VJY9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Loquacious
H
48N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MLY
Query on MLY
A, B, C, D, E, F, G
L-PEPTIDE LINKINGC8 H18 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.647 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.206 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 66.018α = 90.00
b = 112.970β = 90.00
c = 114.049γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
XDSdata reduction
Cootmodel building
SHARPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-01-13
    Type: Initial release