4X8W | pdb_00004x8w

dsRBD3 of Loquacious

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	JmjC,JmjN	e4x8wG1	A: a/b three-layered sandwiches	X: ACP-like	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: JmjC,JmjN	ECOD (v294.1)
F	Glyco_hydro_31_2nd	e4x8wF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F: Glyco_hydro_31_2nd	ECOD (v294.1)
E	JmjC,JmjN	e4x8wE1	A: a/b three-layered sandwiches	X: ACP-like	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: JmjC,JmjN	ECOD (v294.1)
D	JmjC,JmjN	e4x8wD1	A: a/b three-layered sandwiches	X: ACP-like	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: JmjC,JmjN	ECOD (v294.1)
C	JmjC,JmjN	e4x8wC1	A: a/b three-layered sandwiches	X: ACP-like	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: JmjC,JmjN	ECOD (v294.1)
B	JmjC,JmjN	e4x8wB1	A: a/b three-layered sandwiches	X: ACP-like	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: JmjC,JmjN	ECOD (v294.1)
A	JmjC,JmjN	e4x8wA1	A: a/b three-layered sandwiches	X: ACP-like	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: JmjC,JmjN	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.160.20	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)
A	3.30.160.20	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H	Loquacious	-	-	-
A, B, C, D, E A, B, C, D, E, F, G	Loquacious, isoform B	regulatory RNA binding RNA binding siRNA binding binding nucleic acid binding RISC complex binding ribonucleoprotein complex binding protein-containing complex binding double-stranded RNA binding	regulation of biosynthetic process regulation of biological process regulation of cellular process sex-chromosome dosage compensation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process cellular component organization regulation of gene expression biosynthetic process dosage compensation by hyperactivation of X chromosome chromatin organization chromatin remodeling regulation of biosynthetic process regulation of biological process regulation of cellular process sex-chromosome dosage compensation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process cellular component organization regulation of gene expression biosynthetic process dosage compensation by hyperactivation of X chromosome chromatin organization chromatin remodeling cellular process regulation of macromolecule biosynthetic process metabolic process cellular component organization or biogenesis macromolecule metabolic process regulation of metabolic process negative regulation of biological process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process negative regulation of cellular process RNA processing negative regulation of macromolecule metabolic process negative regulation of metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process siRNA processing regulatory ncRNA processing regulatory ncRNA-mediated gene silencing negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development ribonucleoprotein complex biogenesis RISC complex assembly protein-RNA complex assembly cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly protein-containing complex organization germ-line stem cell population maintenance maintenance of cell number stem cell population maintenance pre-miRNA processing miRNA processing miRNA metabolic process regulation of primary metabolic process regulation of regulatory ncRNA processing regulation of gene silencing by regulatory ncRNA sexual reproduction cellular developmental process stem cell division reproductive process oogenesis multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation asymmetric cell division germ-line stem cell division gamete generation cell differentiation germ cell development cell division asymmetric stem cell division female germ-line stem cell asymmetric division germline stem cell asymmetric division	protein-containing complex ribonucleoprotein complex RNAi effector complex RISC complex RISC-loading complex endoribonuclease complex catalytic complex intracellular protein-containing complex endonuclease complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex ribonucleoprotein complex RNAi effector complex RISC complex RISC-loading complex endoribonuclease complex catalytic complex intracellular protein-containing complex endonuclease complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR051247	RISC Loading Complex Component	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR014720	Double-stranded RNA-binding domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F, G	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.