4WZX

ULK3 regulates cytokinetic abscission by phosphorylating ESCRT-III proteins


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.151 
  • R-Value Observed: 0.154 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

ULK3 regulates cytokinetic abscission by phosphorylating ESCRT-III proteins.

Caballe, A.Wenzel, D.M.Agromayor, M.Alam, S.L.Skalicky, J.J.Kloc, M.Carlton, J.G.Labrador, L.Sundquist, W.I.Martin-Serrano, J.

(2015) Elife 4: e06547-e06547

  • DOI: 10.7554/eLife.06547
  • Primary Citation of Related Structures:  
    4WZX

  • PubMed Abstract: 
  • The endosomal sorting complexes required for transport (ESCRT) machinery mediates the physical separation between daughter cells during cytokinetic abscission. This process is regulated by the abscission checkpoint, a genome protection mechanism that relies on Aurora B and the ESCRT-III subunit CHMP4C to delay abscission in response to chromosome missegregation ...

    The endosomal sorting complexes required for transport (ESCRT) machinery mediates the physical separation between daughter cells during cytokinetic abscission. This process is regulated by the abscission checkpoint, a genome protection mechanism that relies on Aurora B and the ESCRT-III subunit CHMP4C to delay abscission in response to chromosome missegregation. In this study, we show that Unc-51-like kinase 3 (ULK3) phosphorylates and binds ESCRT-III subunits via tandem MIT domains, and thereby, delays abscission in response to lagging chromosomes, nuclear pore defects, and tension forces at the midbody. Our structural and biochemical studies reveal an unusually tight interaction between ULK3 and IST1, an ESCRT-III subunit required for abscission. We also demonstrate that IST1 phosphorylation by ULK3 is an essential signal required to sustain the abscission checkpoint and that ULK3 and CHMP4C are functionally linked components of the timer that controls abscission in multiple physiological situations.


    Organizational Affiliation

    Department of Infectious Diseases, King's College London School of Medicine, London, United Kingdom.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Serine/threonine-protein kinase ULK3A95Homo sapiensMutation(s): 0 
Gene Names: ULK3
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6PHR2 (Homo sapiens)
Explore Q6PHR2 
Go to UniProtKB:  Q6PHR2
PHAROS:  Q6PHR2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6PHR2
Protein Feature View
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
IST1 homologB [auth E]23Homo sapiensMutation(s): 0 
Gene Names: IST1KIAA0174
UniProt & NIH Common Fund Data Resources
Find proteins for P53990 (Homo sapiens)
Explore P53990 
Go to UniProtKB:  P53990
PHAROS:  P53990
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53990
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
D [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CO
Query on CO

Download Ideal Coordinates CCD File 
C [auth A]COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.151 
  • R-Value Observed: 0.154 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.117α = 90
b = 79.117β = 90
c = 96.62γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM112080
American Cancer SocietyUnited StatesPF-14-102-01-CSM

Revision History  (Full details and data files)

  • Version 1.0: 2015-06-03
    Type: Initial release
  • Version 1.1: 2015-06-10
    Changes: Database references
  • Version 1.2: 2015-08-26
    Changes: Database references
  • Version 1.3: 2017-09-27
    Changes: Author supporting evidence, Derived calculations
  • Version 1.4: 2019-12-25
    Changes: Author supporting evidence