Macromolecule Content

Total Structure Weight: 175.22 kDa
Atom Count: 12,728
Modelled Residue Count: 1,396
Deposited Residue Count: 1,538
Unique protein chains: 1

4WZ8

Crystal structure of human-yeast chimera acetyl coA carboxylase CT domain bound to Compound 6

PDB DOI: 10.2210/pdb4WZ8/pdb

Classification: LIGASE/LIGASE INHIBITOR
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-11-18 Released: 2014-12-10
Deposition Author(s): Vajdos, F.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.23 Å
R-Value Free: 0.209
R-Value Work: 0.177
R-Value Observed: 0.179

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Decreasing the Rate of Metabolic Ketone Reduction in the Discovery of a Clinical Acetyl-CoA Carboxylase Inhibitor for the Treatment of Diabetes.

Griffith, D.A., Kung, D.W., Esler, W.P., Amor, P.A., Bagley, S.W., Beysen, C., Carvajal-Gonzalez, S., Doran, S.D., Limberakis, C., Mathiowetz, A.M., McPherson, K., Price, D.A., Ravussin, E., Sonnenberg, G.E., Southers, J.A., Sweet, L.J., Turner, S.M., Vajdos, F.F.

(2014) J Med Chem 57: 10512-10526

PubMed: 25423286 Search on PubMedSearch on PubMed Central
DOI: 10.1021/jm5016022
Primary Citation of Related Structures:
4WYO, 4WZ8

PubMed Abstract:

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-CoA carboxylase	A [auth B], B [auth C]	769	Saccharomyces cerevisiae S288C	Mutation(s): 9 Gene Names: ACC1, ABP2, FAS3, MTR7, YNR016C, N3175 EC: 6.4.1.2 (PDB Primary Data), 6.3.4.14 (PDB Primary Data)
UniProt
Find proteins for Q00955 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q00955 Go to UniProtKB: Q00955
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q00955
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
3W7 Query on 3W7 Download Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain D [auth C] MOL2 format, chain C [auth B] MOL2 format, chain D [auth C]	C [auth B], D [auth C]	1'-(2H-indazol-5-ylcarbonyl)-1-(propan-2-yl)-1,4-dihydrospiro[indazole-5,4'-piperidin]-7(6H)-one C₂₂ H₂₅ N₅ O₂ BJMKYJZZEBEMKH-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.23 Å
R-Value Free: 0.209
R-Value Work: 0.177
R-Value Observed: 0.179
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.52	α = 90
b = 138.03	β = 90
c = 184.83	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
BUSTER-TNT	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2014-12-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-12-10
Type: Initial release
Version 1.1: 2015-01-14
Changes: Database references
Version 1.2: 2017-11-22
Changes: Database references, Derived calculations, Refinement description, Source and taxonomy

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.