4WSG | pdb_00004wsg

Crystal Structure of Soluble WR PIV5 F-GCNt

• PDB DOI: https://doi.org/10.2210/pdb4WSG/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Mammalian orthorubulavirus 5
• Expression System: Trichoplusia ni
• Mutation(s): No 


• Deposited: 2014-10-27 Released: 2015-01-21 
• Deposition Author(s): Poor, T.A., Song, A.S., Welch, B.D., Kors, C.A., Jardetzky, T.S., Lamb, R.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 
  0.281 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.230 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.233 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Soluble WR PIV5 F-GCNt

Poor, T.A., Song, A.S., Welch, B.D., Kors, C.A., Jardetzky, T.S., Lamb, R.A.

(2015) J Virol 89

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 161.61 kDa 
• Atom Count: 10,735 
• Modeled Residue Count: 1,435 
• Deposited Residue Count: 1,491 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusion glycoprotein F0	A, B, C	497	Mammalian orthorubulavirus 5	Mutation(s): 0
UniProt
Find proteins for P04849 (Parainfluenza virus 5 (strain W3)) Explore P04849  Go to UniProtKB:  P04849

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	D [auth A], E [auth A], F [auth B], G [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free:  0.281 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.230 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.233 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.528	α = 90
b = 155.523	β = 90
c = 157.26	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data reduction
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-01-21 
Deposition Author(s): Poor, T.A., Song, A.S., Welch, B.D., Kors, C.A., Jardetzky, T.S., Lamb, R.A.

Revision History  

• Version 1.0: 2015-01-21
  Type: Initial release
  
• Version 1.1: 2017-09-27
  Changes: Data collection, Derived calculations, Other, Source and taxonomy, Structure summary
• Version 1.2: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary
• Version 1.3: 2023-09-27
  Changes: Data collection, Database references, Refinement description, Structure summary
• Version 1.4: 2024-10-16
  Changes: Structure summary