4WRR | pdb_00004wrr

A putative diacylglycerol kinase from Bacillus anthracis str. Sterne

• PDB DOI: https://doi.org/10.2210/pdb4WRR/pdb

• Classification: TRANSFERASE
• Organism(s): Bacillus anthracis str. Sterne
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2014-10-24 Released: 2014-11-05 
• Deposition Author(s): Hou, J., Zheng, H., Cooper, D.R., Zimmerman, M.D., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.16 Å
• R-Value Free: 
  0.234 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.204 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a putative diacylglycerol kinase from Bacillus anthracis str. Sterne

Hou, J., Zheng, H., Cooper, D.R., Zimmerman, M.D., Minor, W.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 131.65 kDa 
• Atom Count: 8,603 
• Modeled Residue Count: 1,140 
• Deposited Residue Count: 1,200 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
putative diacylglycerol kinase	A, B, C, D	300	Bacillus anthracis str. Sterne	Mutation(s): 0  Gene Names: BAK_5150 EC: 2.7.1.107
UniProt
Find proteins for A0A6L8P1L2 (Bacillus anthracis) Explore A0A6L8P1L2  Go to UniProtKB:  A0A6L8P1L2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	E [auth A], F [auth B], G [auth C], H [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.16 Å
• R-Value Free:  0.234 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.204 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m3gk51

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.099	α = 90
b = 138.486	β = 111.48
c = 78.338	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data reduction
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2014-11-05 
Deposition Author(s): Hou, J., Zheng, H., Cooper, D.R., Zimmerman, M.D., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272200700058C

Revision History  

• Version 1.0: 2014-11-05
  Type: Initial release
  
• Version 1.1: 2015-06-03
  Changes: Database references
• Version 1.2: 2015-10-14
  Changes: Data collection
• Version 1.3: 2017-09-27
  Changes: Author supporting evidence, Derived calculations
• Version 1.4: 2019-12-04
  Changes: Author supporting evidence
• Version 1.5: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary
• Version 1.6: 2023-09-27
  Changes: Data collection, Refinement description