Download MendeleyCrystal structure of Fructokinase from Brucella abortus 2308 with bound AMPPNP
Horanyi, P.S., Dranow, D.M., Fischer, E., Abendroth, J., Lorimer, D.D., Edwards, T.To be published.
4WJM
Crystal structure of Fructokinase from Brucella abortus 2308 with bound AMPPNP
- PDB DOI: https://doi.org/10.2210/pdb4WJM/pdb
- Classification: TRANSFERASE
- Organism(s): Brucella abortus 2308
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-10-01 Released: 2014-10-22
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.195
- R-Value Work: 0.170
- R-Value Observed: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribokinase:Carbohydrate kinase, PfkB | 312 | Brucella abortus 2308 | Mutation(s): 0 Gene Names: cscK, BAB1_0112 EC: 2.7.1.4 |  | |
UniProt | |||||
Find proteins for Q2YNY7 (Brucella abortus (strain 2308)) Explore Q2YNY7 Go to UniProtKB: Q2YNY7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2YNY7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANP Query on ANP | B [auth A] | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N |  | ||
| MLA Query on MLA | F [auth A] | MALONIC ACID C3 H4 O4 OFOBLEOULBTSOW-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A], E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MG Query on MG | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.195
- R-Value Work: 0.170
- R-Value Observed: 0.171
- Space Group: P 42 21 2
- Diffraction Data: https://doi.org/10.18430/M34WJM
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 109.89 | α = 90 |
| b = 109.89 | β = 90 |
| c = 58.1 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2014-10-22 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2014-10-22
Type: Initial release - Version 1.1: 2015-04-29
Changes: Non-polymer description - Version 1.2: 2017-09-06
Changes: Author supporting evidence, Derived calculations, Other, Source and taxonomy, Structure summary - Version 1.3: 2017-11-22
Changes: Refinement description - Version 1.4: 2019-12-11
Changes: Author supporting evidence
