Download MendeleyStructure of Bradyrhizobium japonicum ScoI with copper bound
Quade, N., Abicht, H.K., Hennecke, H., Glockshuber, R.To be published.
4WBR
Structure of Bradyrhizobium japonicum ScoI with copper bound
- PDB DOI: https://doi.org/10.2210/pdb4WBR/pdb
- Classification: CHAPERONE
- Organism(s): Bradyrhizobium diazoefficiens USDA 110
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-09-03 Released: 2015-09-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.175
- R-Value Work: 0.126
- R-Value Observed: 0.128
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Blr1131 protein | A [auth D] | 157 | Bradyrhizobium diazoefficiens USDA 110 | Mutation(s): 0 Gene Names: blr1131 |  |
UniProt | |||||
Find proteins for Q89VB6 (Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)) Explore Q89VB6 Go to UniProtKB: Q89VB6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q89VB6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CU Query on CU | B [auth D] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.175
- R-Value Work: 0.126
- R-Value Observed: 0.128
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.86 | α = 90 |
| b = 44.76 | β = 90 |
| c = 40 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XSCALE | data scaling |
| PHASER | phasing |
| XSCALE | data reduction |
Entry History
Deposition Data
- Released Date: 2015-09-23 Deposition Author(s): Quade, N., Abicht, H.K., Hennecke, H., Glockshuber, R.
Revision History (Full details and data files)
- Version 1.0: 2015-09-23
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description
