4UTH

XenA - oxidized - Y183F variant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.136 
  • R-Value Observed: 0.137 

wwPDB Validation   3D Report Full Report



Literature

Redox-dependent substrate-cofactor interactions in the Michaelis-complex of a flavin-dependent oxidoreductase

Werther, T.Wahlefeld, S.Salewski, J.Kuhlmann, U.Zebger, I.Hildebrandt, P.Dobbek, H.

(2017) Nat Commun 8: 16084


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
NADH:flavin oxidoreductaseA365Pseudomonas putidaMutation(s): 1 
Gene Names: B7H19_27640xenA
Find proteins for Q3ZDM6 (Pseudomonas putida)
Explore Q3ZDM6 
Go to UniProtKB:  Q3ZDM6
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download CCD File 
A
FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.136 
  • R-Value Observed: 0.137 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.477α = 90
b = 83.218β = 90
c = 156.162γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2014-07-21 
  • Released Date: 2015-08-05 
  • Deposition Author(s): Werther, T., Dobbek, H.
  • This entry supersedes: 3N16

Revision History 

  • Version 1.0: 2015-08-05
    Type: Initial release
  • Version 1.1: 2017-08-16
    Changes: Database references
  • Version 2.0: 2017-08-23
    Changes: Advisory, Atomic model, Database references, Derived calculations, Source and taxonomy, Structure summary