4UTH

XenA - oxidized - Y183F variant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.136 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Redox-dependent substrate-cofactor interactions in the Michaelis-complex of a flavin-dependent oxidoreductase

Werther, T.Wahlefeld, S.Salewski, J.Kuhlmann, U.Zebger, I.Hildebrandt, P.Dobbek, H.

(2017) Nat Commun 8: 16084


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NADH:flavin oxidoreductase
A
365Pseudomonas putidaMutation(s): 1 
Gene Names: xenA
Find proteins for Q3ZDM6 (Pseudomonas putida)
Go to UniProtKB:  Q3ZDM6
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FMN
Query on FMN

Download SDF File 
Download CCD File 
A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.136 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 57.477α = 90.00
b = 83.218β = 90.00
c = 156.162γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2014-07-21 
  • Released Date: 2015-08-05 
  • Deposition Author(s): Werther, T., Dobbek, H.
  • This entry supersedes: 3N16

Revision History 

  • Version 1.0: 2015-08-05
    Type: Initial release
  • Version 1.1: 2017-08-16
    Type: Database references
  • Version 2.0: 2017-08-23
    Type: Advisory, Atomic model, Database references, Derived calculations, Source and taxonomy, Structure summary