4UE0

Structure of the bovine atadenovirus type 4 fibre head protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.146 
  • R-Value Work: 0.116 
  • R-Value Observed: 0.117 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of the fibre head domain of bovine adenovirus 4, a ruminant atadenovirus.

Nguyen, T.H.Vidovszky, M.Z.Ballmann, M.Z.Sanz-Gaitero, M.Singh, A.K.Harrach, B.Benko, M.van Raaij, M.J.

(2015) Virol J 12: 81-81

  • DOI: 10.1186/s12985-015-0309-1
  • Primary Citation of Related Structures:  
    4UE0

  • PubMed Abstract: 
  • In adenoviruses, primary host cell recognition is generally performed by the head domains of their homo-trimeric fibre proteins. This first interaction is reversible. A secondary, irreversible interaction subsequently takes place via other adenovirus capsid proteins and leads to a productive infection ...

    In adenoviruses, primary host cell recognition is generally performed by the head domains of their homo-trimeric fibre proteins. This first interaction is reversible. A secondary, irreversible interaction subsequently takes place via other adenovirus capsid proteins and leads to a productive infection. Although many fibre head structures are known for human mastadenoviruses, not many animal adenovirus fibre head structures have been determined, especially not from those belonging to adenovirus genera other than Mastadenovirus.


    Organizational Affiliation

    Departamento de Estructura de Macromoleculas, Centro Nacional de Biotecnologia (CNB-CSIC), calle Darwin 3, 28049, Madrid, Spain. mjvanraaij@cnb.csic.es.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
FIBERA, B, C122Bovine adenovirus 4Mutation(s): 0 
UniProt
Find proteins for Q997H2 (Bovine adenovirus 4)
Explore Q997H2 
Go to UniProtKB:  Q997H2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ997H2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CO3
Query on CO3

Download Ideal Coordinates CCD File 
D [auth B]CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
 Ligand Interaction
SCN
Query on SCN

Download Ideal Coordinates CCD File 
E [auth C]THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.146 
  • R-Value Work: 0.116 
  • R-Value Observed: 0.117 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.33α = 117.11
b = 48.19β = 95.56
c = 52.07γ = 110.17
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
autoSHARPphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-06-03
    Type: Initial release
  • Version 1.1: 2018-02-07
    Changes: Database references