4TQV

Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.50 Å
  • R-Value Free: 0.320 
  • R-Value Work: 0.279 
  • R-Value Observed: 0.280 

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Literature

Structure of a Bacterial ABC Transporter Involved in the Import of an Acidic Polysaccharide Alginate

Maruyama, Y.Itoh, T.Kaneko, A.Nishitani, Y.Mikami, B.Hashimoto, W.Murata, K.

(2015) Structure 23: 1643-1654

  • DOI: 10.1016/j.str.2015.06.021
  • Primary Citation of Related Structures:  
    4TQU, 4TQV

  • PubMed Abstract: 
  • The acidic polysaccharide alginate represents a promising marine biomass for the microbial production of biofuels, although the molecular and structural characteristics of alginate transporters remain to be clarified. In Sphingomonas sp. A1, the ATP-binding cassette transporter AlgM1M2SS is responsible for the import of alginate across the cytoplasmic membrane ...

    The acidic polysaccharide alginate represents a promising marine biomass for the microbial production of biofuels, although the molecular and structural characteristics of alginate transporters remain to be clarified. In Sphingomonas sp. A1, the ATP-binding cassette transporter AlgM1M2SS is responsible for the import of alginate across the cytoplasmic membrane. Here, we present the substrate-transport characteristics and quaternary structure of AlgM1M2SS. The addition of poly- or oligoalginate enhanced the ATPase activity of reconstituted AlgM1M2SS coupled with one of the periplasmic solute-binding proteins, AlgQ1 or AlgQ2. External fluorescence-labeled oligoalginates were specifically imported into AlgM1M2SS-containing proteoliposomes in the presence of AlgQ2, ATP, and Mg(2+). The crystal structure of AlgQ2-bound AlgM1M2SS adopts an inward-facing conformation. The interaction between AlgQ2 and AlgM1M2SS induces the formation of an alginate-binding tunnel-like structure accessible to the solvent. The translocation route inside the transmembrane domains contains charged residues suitable for the import of acidic saccharides.


    Organizational Affiliation

    Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan. Electronic address: k-murata@lif.setsunan.ac.jp.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
AlgM1A, E, I, M301Sphingomonas sp.Mutation(s): 0 
Gene Names: algM1
Membrane Entity: Yes 
UniProt
Find proteins for Q9KWT8 (Sphingomonas sp)
Explore Q9KWT8 
Go to UniProtKB:  Q9KWT8
Entity Groups  
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UniProt GroupQ9KWT8
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
AlgM2B, F, J, N305Sphingomonas sp.Mutation(s): 0 
Gene Names: algM2
Membrane Entity: Yes 
UniProt
Find proteins for Q9KWT7 (Sphingomonas sp)
Explore Q9KWT7 
Go to UniProtKB:  Q9KWT7
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UniProt GroupQ9KWT7
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
AlgS
C, D, G, H, K, L, O, P
C, D, G, H, K, L, O, P
363Sphingomonas sp.Mutation(s): 1 
Gene Names: algS
UniProt
Find proteins for Q9KWT9 (Sphingomonas sp)
Explore Q9KWT9 
Go to UniProtKB:  Q9KWT9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9KWT9
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.50 Å
  • R-Value Free: 0.320 
  • R-Value Work: 0.279 
  • R-Value Observed: 0.280 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 115.245α = 68.66
b = 151.187β = 81.76
c = 162.406γ = 90.1
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Grants-in-Aid for Scientific Research from Japan Society for the Promotion of ScienceJapan--
Targeted Proteins Research Program from Ministry of Education, Culture, Sports, Science, and TechnologyJapan--

Revision History  (Full details and data files)

  • Version 1.0: 2015-07-22
    Type: Initial release
  • Version 1.1: 2015-08-19
    Changes: Database references
  • Version 1.2: 2015-09-16
    Changes: Database references
  • Version 1.3: 2020-01-29
    Changes: Data collection, Database references, Derived calculations