4RYY

Crystal structure of RPE65 in complex with R-emixustat and palmitate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.179 

wwPDB Validation 3D Report Full Report



Literature

The Janus face of primary amine compounds in visual cycle modulation

Zhang, J.Kiser, P.D.Badiee, M.Palczewska, G.Golczak, M.Tochtrop, G.P.Palczewski, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Retinoid isomerohydrolase
A, B
533Bos taurusMutation(s): 1 
Gene Names: RPE65
EC: 3.1.1.64 (PDB Primary Data), 5.3.3.22 (UniProt)
Find proteins for Q28175 (Bos taurus)
Go to UniProtKB:  Q28175
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A3V
Query on A3V

Download CCD File 
A, B
(1R)-3-amino-1-[3-(cyclohexylmethoxy)phenyl]propan-1-ol
C16 H25 N O2
WJIGGYYSZBWCGC-MRXNPFEDSA-N
 Ligand Interaction
PLM
Query on PLM

Download CCD File 
A, B
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
 Ligand Interaction
FE2
Query on FE2

Download CCD File 
A, B
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.179 
  • Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 175.844α = 90
b = 175.844β = 90
c = 86.424γ = 120
Software Package:
Software NamePurpose
XDSdata scaling
REFMACrefinement
XDSdata reduction
REFMACphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-05-27
    Type: Initial release