4RYX

Crystal structure of RPE65 in complex with emixustat and palmitate, P6522 crystal form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The Janus face of primary amine compounds in visual cycle modulation

Zhang, J.Kiser, P.D.Badiee, M.Palczewska, G.Golczak, M.Tochtrop, G.P.Palczewski, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Retinoid isomerohydrolase
A
533Bos taurusMutation(s): 0 
Gene Names: RPE65
EC: 3.1.1.64
Find proteins for Q28175 (Bos taurus)
Go to Gene View: RPE65
Go to UniProtKB:  Q28175
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FE2
Query on FE2

Download SDF File 
Download CCD File 
A
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
A3V
Query on A3V

Download SDF File 
Download CCD File 
A
(1R)-3-amino-1-[3-(cyclohexylmethoxy)phenyl]propan-1-ol
C16 H25 N O2
WJIGGYYSZBWCGC-MRXNPFEDSA-N
 Ligand Interaction
MPD
Query on MPD

Download SDF File 
Download CCD File 
A
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
PLM
Query on PLM

Download SDF File 
Download CCD File 
A
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.164 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 177.766α = 90.00
b = 177.766β = 90.00
c = 86.580γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACphasing
REFMACrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-05-27
    Type: Initial release