4RPF

Crystal structure of homoserine kinase from Yersinia pestis Nepal516, NYSGRC target 032715


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.242 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Homoserine kinase
A, B, C
310Yersinia pestis Nepal516Mutation(s): 0 
Gene Names: thrBYPN_0332YP516_0338
EC: 2.7.1.39
Find proteins for Q1CMW6 (Yersinia pestis bv. Antiqua (strain Nepal516))
Go to UniProtKB:  Q1CMW6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CIT
Query on CIT

Download CCD File 
A, B, C
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.242 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 162.861α = 90
b = 93.659β = 90.14
c = 107.617γ = 90
Software Package:
Software NamePurpose
SHELXmodel building
BUCCANEERmodel building
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
SHELXphasing
BUCCANEERphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History 

  • Version 1.0: 2014-11-12
    Type: Initial release
  • Version 1.1: 2018-01-24
    Changes: Database references