4RCK

Crystal Structure of Uncharacterized Membrane Spanning Protein from Vibrio fischeri

• PDB DOI: https://doi.org/10.2210/pdb4RCK/pdb

• Classification: MEMBRANE PROTEIN
• Organism(s): Aliivibrio fischeri ES114
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-09-16 Released: 2014-11-26 
• Deposition Author(s): Kim, Y., Tesar, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.237 
• R-Value Work: 0.195 
• R-Value Observed: 0.197 

Literature

Crystal Structure of Uncharacterized Membrane Spanning Protein from Vibrio fischeri

Kim, Y., Tesar, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 49.07 kDa 
• Atom Count: 3,174 
• Modelled Residue Count: 406 
• Deposited Residue Count: 440 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical membrane spanning protein	A, B	220	Aliivibrio fischeri ES114	Mutation(s): 0  Gene Names: VF_A0681
UniProt
Find proteins for Q5DZP5 (Aliivibrio fischeri (strain ATCC 700601 / ES114)) Explore Q5DZP5  Go to UniProtKB:  Q5DZP5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	C [auth A], D [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.237 
• R-Value Work: 0.195 
• R-Value Observed: 0.197 
• Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.734	α = 90
b = 49.734	β = 90
c = 343.88	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
SHELXS	phasing
MLPHARE	phasing
DM	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-11-26 
Deposition Author(s): Kim, Y., Tesar, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2014-11-26
  Type: Initial release