4R6M

Crystal Structure of DNA Duplex Containing Two Consecutive Mercury-mediated Base Pairs


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal Structure of DNA Duplex Containing Two Consecutive Mercury-mediated Base Pairs

Xu, C.Y.Yu, F.Wang, L.H.Zhao, Y.Lin, T.Fan, C.H.He, J.H.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsLengthOrganismImage
DNA (5'-D(P*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3')A, C, E10synthetic construct
Protein Feature View
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  • Reference Sequence

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Entity ID: 2
MoleculeChainsLengthOrganismImage
DNA (5'-D(P*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3')B, D, F10synthetic construct
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HG
Query on HG

Download Ideal Coordinates CCD File 
G [auth B],
H [auth B],
I [auth D],
J [auth D],
K [auth E],
G [auth B],
H [auth B],
I [auth D],
J [auth D],
K [auth E],
L [auth F]
MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.785α = 90
b = 70.785β = 90
c = 108.037γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
SHELXSphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-02
    Type: Initial release