4PKN

Crystal structure of the football-shaped GroEL-GroES2-(ADPBeFx)14 complex containing substrate Rubisco

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.66 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Formation and structures of GroEL:GroES2 chaperonin footballs, the protein-folding functional form.

Fei, X., Ye, X., LaRonde, N.A., Lorimer, G.H.

(2014) Proc Natl Acad Sci U S A 111: 12775-12780

  • DOI: https://doi.org/10.1073/pnas.1412922111
  • Primary Citation of Related Structures:  
    4PKN, 4PKO

  • PubMed Abstract: 

    • The GroE chaperonins assist substrate protein (SP) folding by cycling through several conformational states. With each cycle the SP is, in turn, captured, unfolded, briefly encapsulated (t1/2 ∼ 1 s), and released by the chaperonin complex. The protein-folding functional form is the US-football-shaped GroEL:GroES2 complex ...

    The GroE chaperonins assist substrate protein (SP) folding by cycling through several conformational states. With each cycle the SP is, in turn, captured, unfolded, briefly encapsulated (t1/2 ∼ 1 s), and released by the chaperonin complex. The protein-folding functional form is the US-football-shaped GroEL:GroES2 complex. We report structures of two such "football" complexes to ∼ 3.7-Å resolution; one is empty whereas the other contains encapsulated SP in both chambers. Although encapsulated SP is not visible on the electron density map, using calibrated FRET and order-of-addition experiments we show that owing to SP-catalyzed ADP/ATP exchange both chambers of the football complex encapsulate SP efficiently only if the binding of SP precedes that of ATP. The two rings of GroEL thus behave as a parallel processing machine, rather than functioning alternately. Compared with the bullet-shaped GroEL:GroES1 complex, the GroEL:GroES2 football complex differs conformationally at the GroEL-GroES interface and also at the interface between the two GroEL rings. We propose that the electrostatic interactions between the ε-NH(3+) of K105 of helix D in one ring with the negatively charged carboxyl oxygen of A109 at the carboxyl end of helix D of the other ring provide the structural basis for negative inter-ring cooperativity.

    Organizational Affiliation: 

    Biophysics Graduate Program, Center for Biological Structure and Organization, Biochemistry Graduate Program, Department of Chemistry and Biochemistry, and Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742 glorimer@umd.edu.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
60 kDa chaperonin548Escherichia coliMutation(s): 0 
Gene Names: 
groEL, groL, mopA, BN17_41231, BU34_16740, ECs5124, LF82_0923, groL_1, A5U30_003693, A8499_001284, A8499_005479, A9X72_22960, ACN68_26960, ACN81_06325, ACU57_19295, AM464_15770, APX88_10225, AT335_004348, AT845_002714, AW118_06985, AW119_22780, B6R12_001246, B6R12_005482, B6R15_002033, B6R31_000859, B6R48_001160, B6R87_001161, BANRA_00147, BANRA_00718, BEA19_16435, BER14_11410, BF481_004183, BG944_005198, BHS81_24830, BJI68_16795, BJJ90_23450, BK292_23445, BK383_12940, BMC79_004320, BMC79_005357, BMT49_19180, BMT50_06320, BMT91_05495, BO068_004278, BOH76_02880, BON63_07075, BON64_05055, BON65_22610, BON66_25750, BON67_00070, BON68_27655, BON69_04690, BON70_25350, BON71_15855, BON72_19590, BON73_07370, BON74_00810, BON75_25260, BON76_04275, BON77_18135, BON78_14675, BON79_10870, BON80_13640, BON81_15965, BON82_09980, BON83_17240, BON84_18355, BON86_07405, BON87_11955, BON88_05980, BON90_19910, BON91_12970, BON92_18275, BON93_15345, BON94_08655, BON95_05420, BON96_03715, BON97_19710, BON98_17880, BR158_004302, BR158_005676, BSR05_14030, BTQ06_07135, BvCmsF30A_00833, BvCmsHHP019_00806, BvCmsHHP056_01305, BvCmsKKP036_00132, BvCmsKKP061_03324, BvCmsKSNP073_03447, BVL39_04415, BXT93_23590, BZL69_06910, C2121_001093, C2121_005324, C2M16_07145, C2U48_11800, C3F40_14340, C5N07_07010, C5Y87_09545, C9114_00680, C9160_20130, C9E67_27735, C9Z68_08425, CA593_05105, CCS08_01935, CCV12_000687, CCV12_005017, CDC27_22515, CDL36_17910, CDL37_19955, CG831_003422, CIG67_06440, CO706_20635, CR539_02660, CV83915_01888, CWS33_03390, CXJ73_002181, CY655_26170, D0X26_12780, D3822_10750, D3C88_27260, D3G36_16020, D3G36_27385, D3Y67_00555, D4U49_20275, D4U49_28470, D9D43_14725, D9D77_08895, D9E34_15015, D9E49_11975, D9H94_06455, D9J03_08605, D9J61_09370, DAH17_10445, DAH18_16415, DAH19_12055, DAH20_11960, DAH21_25315, DAH22_18760, DAH23_05700, DAH24_05050, DAH25_03370, DAH26_05045, DAH27_28010, DAH28_27455, DAH29_17635, DAH30_16205, DAH31_24530, DAH34_17585, DAH35_18130, DAH36_09875, DAH37_06370, DAH38_24275, DAH40_25495, DAH41_16405, DAH42_13205, DAH43_08635, DAH45_08870, DAH46_08620, DAH47_07725, DAH48_07865, DAH49_08645, DAH50_08530, DD762_21030, DEN86_00710, DEN87_24800, DEN88_19475, DEN89_17490, DEN90_13130, DEN91_19945, DEN92_15550, DEN93_06415, DEN94_10790, DEN95_17440, DEN96_12410, DEN97_13360, DEN98_15280, DEN99_13325, DEO00_11350, DEO01_13545, DEO02_24175, DEO03_06950, DEO04_24535, DEO05_24405, DEO06_14135, DEO07_12755, DEO08_16810, DEO09_24950, DEO10_24520, DEO11_24170, DEO12_13985, DEO13_05685, DEO14_14875, DEO15_07710, DEO17_15430, DEO18_20465, DEO19_26325, DEO20_25075, DKP82_04065, DM870_10425, DN627_22730, DNQ45_22695, DNX30_08345, DNX30_30410, DRW19_22655, DS732_02495, DTL43_02185, DTL90_17410, DTM45_21115, DU321_10255, DXT69_20075, DXT70_06700, DXT71_04100, DXT73_07230, E0I42_01220, E2112_14800, E2113_05120, E2114_01880, E2115_03725, E2116_03515, E2117_08600, E2118_02080, E2120_05935, E2121_02935, E2122_03135, E2123_02135, E2124_07020, E2125_03525, E2127_07020, E2128_02070, E2129_04150, E2130_03760, E2132_24265, E2133_02315, E2134_13845, E2136_01870, E2646_23210, E3N34_15825, E4K51_08915, E4T14_12645, E4T84_12320, E5M02_22815, E5P22_06470, E5P23_06190, E5P24_10765, E5P25_11670, E5P26_01745, E5P27_12285, E5P28_03065, E5P29_11580, E5P30_19990, E5P31_11265, E5P32_03385, E5P33_11365, E5P34_20020, E5P35_07385, E5P36_08610, E5P37_09765, E5P39_02480, E5P40_16785, E5P41_06165, E5P42_03115, E5P43_03105, E5P44_08720, E5P45_01355, E5P46_19000, E5P47_03005, E5P48_09930, E5P49_08945, E5P50_02825, E5P51_05670, E5P52_11560, E5S34_00685, E5S35_05300, E5S36_08480, E5S37_06420, E5S38_10295, E5S39_12665, E5S42_15075, E5S43_14760, E5S44_14045, E5S45_06335, E5S46_10410, E5S47_14980, E5S48_04730, E5S51_06565, E5S52_04995, E5S53_13220, E5S54_12890, E5S55_12185, E5S57_19130, E5S58_09490, E5S59_12615, E5S61_14350, E5S62_09630, EA239_16730, EA435_16360, EAI46_05875, EAN77_04200, EAN77_30790, EAX79_03060, EBP16_10875, EC1094V2_4111, EC95NR1_03760, EHD79_25330, EI021_09520, EIA08_20145, EKI52_12830, EL79_4200, EL80_4116, ELT17_14070, ELT20_09305, ELT21_01005, ELT22_11950, ELT24_09420, ELT25_09435, ELT26_14250, ELT27_08410, ELT28_08405, ELT29_19010, ELT30_18130, ELT31_17770, ELT33_14955, ELT34_11390, ELT35_22660, ELT36_09055, ELT39_09770, ELT40_14710, ELT41_02385, ELT44_17185, ELT45_11555, ELT46_12890, ELT48_15395, ELT50_17565, ELT51_08255, ELT52_15970, ELT54_04355, ELT55_10320, ELT56_16145, ELT58_06705, ELT59_12910, ELT60_17010, ELT61_04400, ELT63_14055, ELT72_09970, ELU07_20900, ELU82_07640, ELU83_14270, ELU85_14365, ELU88_11140, ELU89_09850, ELU90_16290, ELU91_13705, ELU94_20525, ELU95_17870, ELU96_21405, ELU97_18775, ELU98_18375, ELU99_11245, ELV00_11890, ELV01_16465, ELV02_00870, ELV03_16485, ELV04_14305, ELV05_12715, ELV08_11530, ELV09_04460, ELV10_15595, ELV11_06260, ELV12_04820, ELV13_23125, ELV15_01140, ELV16_04385, ELV20_04115, ELV21_14030, ELV22_09270, ELV23_19700, ELV26_07245, ELV28_07840, ELV29_15715, ELV40_01565, ELX48_07490, ELX61_05655, ELX66_12445, ELX68_21125, ELX69_13310, ELX76_24925, ELX79_22305, ELX85_01345, ELX96_02710, ELY02_12210, ELY31_07465, ELY32_09185, ELY36_08775, ELY39_09530, ELY41_00375, ELY48_02650, EPS76_03470, ERS139208_00817, EWK56_08835, ExPECSC038_04651, EXX13_20070, EYV17_07185, EYV18_13170, EYX47_03680, F0L67_00815, F2N31_14635, F3N40_18140, F7F11_04220, F9B07_06155, F9S83_12790, F9S83_28070, F9V24_14020, F9X20_07075, FA868_05635, FA868_23545, FDM60_19580, FE587_02500, FE587_27615, FEJ01_03285, FEJ01_27320, FFF58_08400, FGG80_08295, FJQ51_04800, FJQ51_27630, FKO60_18130, FOI11_014910, FOI11_20770, FPI65_25535, FTV92_15760, FV293_00695, FVB16_06060, FY127_22265, FZC17_10050, FZN31_22125, G3565_26040, G3813_002809, G3813_005845, G4A38_02930, G9448_12350, GAJ26_12690, GF699_21755, GFY34_22220, GFY34_26140, GJ11_26030, GKF89_03295, GNZ05_11940, GP711_17780, GP954_08230, GQM04_14160, GQM09_07865, GQM13_10590, GQW07_07140, GQW07_26595, GQW68_02145, GQW68_27055, GQW80_12405, GQW80_27320, GRC73_06265, GRO95_07230, GRO95_26670, GRW05_17640, GRW57_04440, GSY44_04690, GSY44_27830, GTP88_02585, GTP88_26745, GUC01_08885, GUI33_10710, H0O72_04755, H6Y26_004443, H6Y26_005600, HHH44_003373, HI055_001395, HI055_004873, HIE29_005290, HIN64_003381, HIN64_005174, HJQ60_002547, HJQ60_005759, HJS37_003363, HJS37_005154, HJU54_000770, HJU54_005215, HKA49_000870, HL563_08315, HL601_13705, HL601_27110, HLV18_08720, HLV18_24510, HLZ50_12865, HmCms169_03328, HMJ82_15920, HMU06_18255, HMU06_28485, HMV95_06875, HMW38_14420, HMW38_27590, HNC36_09345, HNC59_12710, HNC59_29175, HNC66_09205, HNC66_27645, HNC99_22380, HNC99_29315, HND12_24605, HND12_30370, HV109_21650, HV209_20120, HVV39_15060, HVW04_12630, HVW43_14140, HVX16_23530, HVY77_23275, HVZ71_22695, HX136_22855, I6H00_16320, I6H01_15150, I6H02_16535, IA00_000538, IA00_005715, IH768_00055, IH772_04800, IT029_000740, IT029_005501, J4S20_000448, J5U05_001408, JE86ST02C_47230, JE86ST05C_48290, JFD_00797, JNP96_02875, NCTC10082_01857, NCTC10089_04560, NCTC10090_02607, NCTC10418_06721, NCTC10764_04513, NCTC10767_00467, NCTC10865_05650, NCTC10974_05136, NCTC11112_02719, NCTC11181_01789, NCTC11341_03019, NCTC12950_04949, NCTC13127_05944, NCTC13216_02274, NCTC4450_01486, NCTC7927_05027, NCTC8008_04112, NCTC8333_05251, NCTC8450_00576, NCTC8500_05095, NCTC8621_04680, NCTC8622_02021, NCTC8959_04316, NCTC8960_02051, NCTC9036_04433, NCTC9037_04611, NCTC9044_02622, NCTC9045_05354, NCTC9073_03984, NCTC9077_05690, NCTC9081_01494, NCTC9111_04720, NCTC9117_05641, NCTC9702_05313, NCTC9706_01822, NCTC9775_02929, NCTC9777_00950, ND22_003151, RG28_06025, SAMEA3472044_01554, SAMEA3472056_01662, SAMEA3751407_02300, SAMEA3753106_03412, TUM18780_39840, WP4S18E07_41060, WR15_07175

EC: 5.6.1.7
UniProt
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Go to UniProtKB:  Q548M1
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UniProt GroupQ548M1
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  • Reference Sequence
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(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
10 kDa chaperonin97Escherichia coliMutation(s): 0 
Gene Names: 
groS, groES, mopB, BN17_41221, BU34_16745, ECs5123, LF82_0924, A2F99_003292, A5U30_003694, A6592_09565, A8499_001283, A8499_005480, A8X14_004025, A9X72_22965, AAG43_001338, AAG80_002484, AAG81_001831, AAS29_001360, ACN68_26965, ACN81_06320, ACU57_19300, AM464_15775, APX88_10230, AT335_004347, AT845_002715, AW118_06980, AW119_22785, AWP47_18450, B6R12_001247, B6R12_005483, B6R15_002034, B6R31_000860, B6R48_001161, B6R87_001162, BANRA_00146, BANRA_00717, BEA19_16430, BER14_11405, BF481_004184, BG944_005199, BHS81_24825, BJI68_16800, BJJ90_23455, BK292_23450, BK383_12935, BMC79_004321, BMC79_005358, BMT49_19175, BMT50_06325, BMT91_05490, BO068_004277, BO178_003841, BO178_004764, BOB65_003316, BOB65_004646, BOH76_02885, BON63_07070, BON64_05060, BON65_22615, BON66_25755, BON67_00075, BON68_27650, BON69_04685, BON70_25355, BON71_15860, BON72_19585, BON73_07365, BON74_00805, BON75_25265, BON76_04280, BON77_18130, BON78_14680, BON79_10865, BON80_13635, BON81_15960, BON82_09985, BON83_17235, BON84_18350, BON86_07410, BON87_11960, BON88_05985, BON89_08505, BON90_19905, BON91_12965, BON92_18270, BON93_15340, BON94_08650, BON95_05415, BON96_03710, BON97_19705, BON98_17885, BR158_004303, BR158_005677, BR331_15480, BRV34_000728, BRV34_004294, BRV41_003661, BRV41_004800, BSR05_14025, BTQ06_07130, BvCmsF30A_00832, BvCmsHHP019_00805, BvCmsHHP056_01306, BvCmsKKP036_00133, BvCmsKKP061_03323, BvCmsKSNP073_03446, BVL39_04420, BXT93_23585, BZL69_06915, C2121_001092, C2121_005325, C2M16_07140, C2U48_11805, C3F40_14345, C5N07_07005, C5Y87_09550, C9114_00675, C9160_20135, C9E67_27740, C9Z68_08420, CA593_05110, CCS08_01940, CCV12_000686, CCV12_005018, CCV24_001199, CDC27_22510, CDL36_17905, CDL37_19960, CG831_003421, CIG67_06435, CO706_20630, CQB02_20590, CR538_23265, CR539_02655, CSE52_003711, CSE52_004419, CV83915_01889, CWS33_03385, CX692_000883, CX693_000883, CX694_003638, CX699_000889, CY655_26165, CYM75_002188, D0X26_12775, D1912_29305, D1H34_003591, D1H34_005473, D3822_10755, D3C88_27265, D3G36_16025, D3G36_27390, D3Y67_00550, D4U49_20270, D4U49_28475, D9D43_14730, D9D77_08900, D9E34_15020, D9E49_11980, D9H94_06460, D9J03_08610, D9J61_09365, DAH17_10440, DAH18_16420, DAH19_12050, DAH20_11965, DAH21_25320, DAH22_18765, DAH23_05705, DAH24_05045, DAH25_03365, DAH26_05040, DAH27_28005, DAH28_27450, DAH29_17640, DAH30_16210, DAH31_24525, DAH32_26505, DAH33_26130, DAH34_17580, DAH35_18125, DAH36_09870, DAH37_06375, DAH38_24270, DAH40_25500, DAH41_16400, DAH42_13210, DAH43_08630, DAH45_08875, DAH46_08615, DAH47_07730, DAH48_07870, DAH49_08640, DAH50_08535, DD762_21025, DEN86_00715, DEN87_24805, DEN88_19470, DEN89_17485, DEN90_13135, DEN91_19950, DEN92_15545, DEN93_06410, DEN94_10785, DEN95_17445, DEN96_12405, DEN97_13355, DEN98_15285, DEN99_13320, DEO00_11345, DEO01_13550, DEO02_24170, DEO03_06945, DEO04_24540, DEO05_24410, DEO06_14130, DEO07_12750, DEO08_16805, DEO09_24945, DEO10_24525, DEO11_24175, DEO12_13980, DEO13_05680, DEO14_14880, DEO15_07705, DEO17_15425, DEO18_20470, DEO19_26320, DEO20_25080, DIV22_13640, DKP82_04070, DM870_10420, DN627_22735, DNQ45_22690, DNX30_08340, DNX30_30415, DRW19_22660, DS732_02490, DTL43_02180, DTL90_17415, DTM45_21120, DU321_10250, DXT69_20080, DXT70_06695, DXT71_04095, DXT73_07225, E0I42_01225, E2112_14805, E2113_05115, E2114_01885, E2115_03730, E2116_03510, E2117_08595, E2118_02085, E2119_06640, E2120_05930, E2121_02930, E2122_03130, E2123_02130, E2124_07025, E2125_03520, E2127_07025, E2128_02075, E2129_04155, E2130_03765, E2131_09715, E2132_24260, E2133_02310, E2134_13840, E2135_09805, E2136_01865, E2646_23215, E3N34_15830, E3O05_14465, E4K51_08910, E4T14_12650, E4T84_12325, E5M02_22820, E5P22_06465, E5P23_06185, E5P24_10770, E5P25_11675, E5P26_01750, E5P27_12280, E5P28_03070, E5P29_11585, E5P30_19985, E5P31_11270, E5P32_03380, E5P33_11370, E5P34_20015, E5P35_07380, E5P36_08615, E5P37_09760, E5P39_02475, E5P40_16780, E5P41_06160, E5P42_03120, E5P43_03110, E5P44_08715, E5P45_01350, E5P46_18995, E5P47_03010, E5P48_09935, E5P49_08950, E5P50_02830, E5P51_05675, E5P52_11555, E5S34_00680, E5S35_05295, E5S36_08475, E5S37_06415, E5S38_10290, E5S39_12660, E5S42_15070, E5S43_14755, E5S44_14050, E5S45_06330, E5S46_10405, E5S47_14975, E5S48_04725, E5S51_06560, E5S52_04990, E5S53_13215, E5S54_12885, E5S55_12180, E5S56_17115, E5S57_19125, E5S58_09495, E5S59_12610, E5S61_14345, E5S62_09625, EA239_16725, EA435_16355, EAI46_05880, EAN77_04205, EAN77_30795, EAX79_03065, EBP16_10880, EC1094V2_4112, EC95NR1_03759, ED648_22350, EHD79_25335, EI021_09515, EIA08_20150, EIZ93_10910, EKI52_12835, EL79_4201, EL80_4117, ELT16_11255, ELT17_14075, ELT20_09310, ELT21_01010, ELT22_11945, ELT23_15235, ELT24_09425, ELT25_09440, ELT26_14245, ELT27_08415, ELT28_08400, ELT29_19005, ELT30_18125, ELT31_17765, ELT32_12500, ELT33_14950, ELT34_11395, ELT35_22665, ELT36_09060, ELT38_14855, ELT39_09775, ELT40_14705, ELT41_02390, ELT44_17180, ELT45_11550, ELT46_12895, ELT48_15400, ELT49_00750, ELT50_17560, ELT51_08260, ELT52_15965, ELT54_04350, ELT55_10325, ELT56_16150, ELT58_06710, ELT59_12915, ELT60_17015, ELT61_04395, ELT63_14050, ELT72_09965, ELU07_20905, ELU82_07635, ELU83_14265, ELU85_14360, ELU88_11135, ELU89_09845, ELU90_16295, ELU91_13710, ELU94_20530, ELU95_17865, ELU96_21400, ELU97_18770, ELU98_18380, ELU99_11240, ELV00_11885, ELV01_16460, ELV02_00865, ELV03_16490, ELV04_14310, ELV05_12710, ELV07_19830, ELV08_11535, ELV09_04455, ELV10_15590, ELV11_06265, ELV12_04825, ELV13_23120, ELV15_01145, ELV16_04380, ELV20_04120, ELV21_14025, ELV22_09275, ELV23_19695, ELV26_07240, ELV28_07845, ELV29_15720, ELV40_01570, ELX48_07495, ELX61_05660, ELX66_12450, ELX68_21130, ELX69_13305, ELX76_24920, ELX79_22300, ELX85_01340, ELX96_02705, ELY02_12215, ELY31_07470, ELY32_09190, ELY36_08770, ELY39_09525, ELY41_00370, ELY48_02645, EPS76_03465, ERS085406_00138, ERS085411_03241, ERS139208_00816, EWK56_08840, ExPECSC038_04650, EXX13_20065, EYV17_07180, EYV18_13175, EYX47_03685, F0L67_00810, F2N31_14630, F3N40_18135, F7F11_04215, F9B07_06160, F9S83_12795, F9S83_28075, F9V22_17375, F9V24_14015, F9X20_07070, FA849_11055, FA849_23530, FA868_05640, FA868_23550, FDM60_19575, FE587_02495, FE587_27620, FEJ01_03280, FEJ01_27325, FEL34_21680, FEL34_23490, FFF58_08405, FGG80_08290, FHD44_08860, FJQ51_04805, FJQ51_27635, FKO60_18125, FOI11_014915, FOI11_20765, FPI65_25530, FQF29_05360, FTV90_07135, FTV92_15765, FTV93_16130, FV293_00690, FVB16_06065, FWK02_12775, FY127_22270, FZC17_10055, FZN31_22130, G3565_26045, G3813_002810, G3813_005846, G4A38_02925, G5603_09450, G9448_12355, GAJ26_12695, GF147_19880, GF147_26935, GF199_21035, GF698_08920, GF699_21750, GFY34_22225, GFY34_26145, GGB84_002001, GIB53_02600, GJ11_26025, GKF89_03290, GNZ05_11935, GP711_17775, GP954_08235, GP979_11955, GQM04_14165, GQM09_07860, GQM13_10585, GQW07_07135, GQW07_26600, GQW68_02150, GQW68_27060, GQW80_12400, GQW80_27325, GRC73_06260, GRO95_07225, GRO95_26675, GRW05_17635, GRW57_04445, GSY44_04695, GSY44_27835, GTP88_02580, GTP88_26750, GUC01_08880, GUI33_10705, H0O53_13625, H0O72_04750, H6Y26_004444, H6Y26_005601, HHH44_003372, HI055_001396, HI055_004874, HIE29_005291, HIN64_003382, HIN64_005175, HIO80_000756, HJ942_000837, HJ942_005045, HJQ60_002548, HJQ60_005760, HJS37_003364, HJS37_005155, HJU54_000769, HJU54_005216, HKA49_000871, HL563_08310, HL601_13700, HL601_27115, HLV18_08715, HLV18_24515, HLZ50_12860, HmCms169_03327, HMJ82_15925, HMU06_18260, HMU06_28490, HMV95_06880, HMW38_14425, HMW38_27595, HNC36_09350, HNC59_12715, HNC59_29180, HNC66_09200, HNC66_27650, HNC99_22385, HNC99_29320, HND12_24610, HND12_30375, HV109_21655, HV146_02280, HV209_20125, HVV39_15055, HVW04_12635, HVW19_12885, HVW43_14145, HVX16_23535, HVX31_18380, HVX32_02125, HVY77_23280, HVZ29_01845, HVZ30_19090, HVZ71_22700, HX136_22860, I6H00_16325, I6H01_15145, I6H02_16530, IA00_000539, IA00_005716, IFB95_001013, IFB95_005315, IH768_00050, IH772_04805, IT029_000741, IT029_005502, J0541_002358, J4S20_000449, J5U05_001409, JE86ST02C_47220, JE86ST05C_48280, JFD_00796, JNP96_02870, NCTC10082_01858, NCTC10089_04561, NCTC10090_02608, NCTC10418_06722, NCTC10764_04514, NCTC10767_00468, NCTC10865_05651, NCTC10974_05137, NCTC11112_02718, NCTC11126_02234, NCTC11181_01790, NCTC11341_03018, NCTC12950_04950, NCTC13127_05945, NCTC13148_04640, NCTC13216_02273, NCTC4450_01487, NCTC7922_05203, NCTC7927_05028, NCTC7928_03914, NCTC8008_04113, NCTC8009_07994, NCTC8179_00967, NCTC8333_05252, NCTC8450_00575, NCTC8500_05096, NCTC8621_04681, NCTC8622_02020, NCTC8959_04317, NCTC8960_02052, NCTC8985_03777, NCTC9036_04434, NCTC9037_04612, NCTC9044_02621, NCTC9045_05355, NCTC9073_03985, NCTC9075_06185, NCTC9077_05691, NCTC9111_04721, NCTC9117_05642, NCTC9706_01823, NCTC9775_02930, NCTC9777_00951, ND22_003152, RG28_06030, SAMEA3472056_01661, SAMEA3472147_02963, SAMEA3751407_02301, SAMEA3752557_01638, SAMEA3753106_03413, TUM18780_39850, WP4S18E07_41070, WR15_07180

UniProt
Find proteins for Q7BGE6 (Escherichia coli)
Explore Q7BGE6 
Go to UniProtKB:  Q7BGE6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7BGE6
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP
Download Ideal Coordinates CCD File 
AB [auth D]
CA [auth G]
CC [auth N]
EB [auth K]
GA [auth A]
AB [auth D],
CA [auth G],
CC [auth N],
EB [auth K],
GA [auth A],
IB [auth J],
KA [auth B],
MB [auth I],
OA [auth F],
QB [auth L],
SA [auth E],
UB [auth M],
WA [auth C],
YB [auth H]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N		 Ligand Interaction
BEF
Query on BEF
Download Ideal Coordinates CCD File 
BB [auth D]
DA [auth G]
DC [auth N]
FB [auth K]
HA [auth A]
BB [auth D],
DA [auth G],
DC [auth N],
FB [auth K],
HA [auth A],
JB [auth J],
LA [auth B],
NB [auth I],
PA [auth F],
RB [auth L],
TA [auth E],
VB [auth M],
XA [auth C],
ZB [auth H]
BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K		 Ligand Interaction
K
Query on K
Download Ideal Coordinates CCD File 
BC [auth H]
DB [auth D]
FA [auth G]
FC [auth N]
HB [auth K]
BC [auth H],
DB [auth D],
FA [auth G],
FC [auth N],
HB [auth K],
JA [auth A],
LB [auth J],
NA [auth B],
PB [auth I],
RA [auth F],
TB [auth L],
VA [auth E],
XB [auth M],
ZA [auth C]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N		 Ligand Interaction
MG
Query on MG
Download Ideal Coordinates CCD File 
AC [auth H]
CB [auth D]
EA [auth G]
EC [auth N]
GB [auth K]
AC [auth H],
CB [auth D],
EA [auth G],
EC [auth N],
GB [auth K],
IA [auth A],
KB [auth J],
MA [auth B],
OB [auth I],
QA [auth F],
SB [auth L],
UA [auth E],
WB [auth M],
YA [auth C]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.66 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.189 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 171.952α = 90
b = 173.653β = 90
c = 411.27γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
University of MarylandUnited StatesAnn.Wylie dissertation fellowship
University of MarylandUnited StatesBailey fellowship

Revision History  (Full details and data files)

  • Version 1.0: 2014-08-20
    Type: Initial release
  • Version 1.1: 2014-09-03
    Changes: Database references
  • Version 1.2: 2014-10-01
    Changes: Database references