4PKN | pdb_00004pkn

Crystal structure of the football-shaped GroEL-GroES2-(ADPBeFx)14 complex containing substrate Rubisco

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	SIR2	e4pknZ1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
Y	SIR2	e4pknY1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
X [auth V]	SIR2	e4pknV1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
W	SIR2	e4pknW1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
V [auth X]	SIR2	e4pknX1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
N [auth S]	SIR2	e4pknS1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
M [auth R]	SIR2	e4pknR1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
L [auth T]	SIR2	e4pknT1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
K [auth U]	SIR2	e4pknU1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
J [auth Q]	SIR2	e4pknQ1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
I [auth P]	SIR2	e4pknP1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
H [auth O]	SIR2	e4pknO1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
BA [auth 1]	SIR2	e4pkn11	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
AA [auth 2]	SIR2	e4pkn21	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
U [auth N]	SIR2	e4pknN1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
T [auth H]	SIR2	e4pknH1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
S [auth M]	SIR2	e4pknM1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
R [auth L]	SIR2	e4pknL1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
Q [auth I]	SIR2	e4pknI1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
P [auth J]	SIR2	e4pknJ1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
O [auth K]	SIR2	e4pknK1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
G [auth D]	SIR2	e4pknD1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
F [auth C]	SIR2	e4pknC1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
E	SIR2	e4pknE1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
D [auth F]	SIR2	e4pknF1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
C [auth B]	SIR2	e4pknB1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
B [auth A]	SIR2	e4pknA1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)
A [auth G]	SIR2	e4pknG1	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: SIR2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
Z	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
Y	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
X [auth V]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
W	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
V [auth X]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
N [auth S]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
M [auth R]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
L [auth T]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
K [auth U]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
J [auth Q]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
I [auth P]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
H [auth O]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
BA [auth 1]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
AA [auth 2]	2.30.33.40	Mainly Beta	Roll	10 Kd Chaperonin, Protein Cpn10	Chain O	CATH (4.3.0)
U [auth N]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
U [auth N]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
U [auth N]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
T [auth H]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
T [auth H]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
T [auth H]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
S [auth M]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
S [auth M]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
S [auth M]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
R [auth L]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
R [auth L]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
R [auth L]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
Q [auth I]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
Q [auth I]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
Q [auth I]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
P [auth J]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
P [auth J]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
P [auth J]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
O [auth K]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
O [auth K]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
O [auth K]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
G [auth D]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
G [auth D]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
G [auth D]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
F [auth C]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
F [auth C]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
F [auth C]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
E	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
E	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
E	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
D [auth F]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
D [auth F]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
D [auth F]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
C [auth B]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
C [auth B]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
C [auth B]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
B [auth A]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
B [auth A]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
B [auth A]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
A [auth G]	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
A [auth G]	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
A [auth G]	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], K [auth U], L [auth T], M [auth R], N [auth S], V [auth X], W, X [auth V], Y, Z	10 kDa chaperonin	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding protein folding chaperone cation binding metal ion binding protein-folding chaperone binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm
A [auth G], B [auth A], C [auth B], D [auth F], E, A [auth G], B [auth A], C [auth B], D [auth F], E, F [auth C], G [auth D], O [auth K], P [auth J], Q [auth I], R [auth L], S [auth M], T [auth H], U [auth N]	60 kDa chaperonin	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding isomerase activity catalytic activity ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity cation binding metal ion binding	protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], K [auth U], L [auth T], M [auth R], N [auth S], V [auth X], W, X [auth V], Y, Z	IPR018369	Chaperonin GroES, conserved site	Conserved Site
AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], K [auth U], L [auth T], M [auth R], N [auth S], V [auth X], W, X [auth V], Y, Z	IPR011032	GroES-like superfamily	Homologous Superfamily
AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], K [auth U], L [auth T], M [auth R], N [auth S], V [auth X], W, X [auth V], Y, Z	IPR020818	GroES chaperonin family	Family
AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], AA [auth 2], BA [auth 1], H [auth O], I [auth P], J [auth Q], K [auth U], L [auth T], M [auth R], N [auth S], V [auth X], W, X [auth V], Y, Z	IPR037124	GroES chaperonin superfamily	Homologous Superfamily
A [auth G], B [auth A], C [auth B], D [auth F], E, A [auth G], B [auth A], C [auth B], D [auth F], E, F [auth C], G [auth D], O [auth K], P [auth J], Q [auth I], R [auth L], S [auth M], T [auth H], U [auth N]	IPR027413	GroEL-like equatorial domain superfamily	Homologous Superfamily
A [auth G], B [auth A], C [auth B], D [auth F], E, A [auth G], B [auth A], C [auth B], D [auth F], E, F [auth C], G [auth D], O [auth K], P [auth J], Q [auth I], R [auth L], S [auth M], T [auth H], U [auth N]	IPR027410	TCP-1-like chaperonin intermediate domain superfamily	Homologous Superfamily
A [auth G], B [auth A], C [auth B], D [auth F], E, A [auth G], B [auth A], C [auth B], D [auth F], E, F [auth C], G [auth D], O [auth K], P [auth J], Q [auth I], R [auth L], S [auth M], T [auth H], U [auth N]	IPR001844	Chaperonin Cpn60/GroEL	Family
A [auth G], B [auth A], C [auth B], D [auth F], E, A [auth G], B [auth A], C [auth B], D [auth F], E, F [auth C], G [auth D], O [auth K], P [auth J], Q [auth I], R [auth L], S [auth M], T [auth H], U [auth N]	IPR018370	Chaperonin Cpn60, conserved site	Conserved Site
A [auth G], B [auth A], C [auth B], D [auth F], E, A [auth G], B [auth A], C [auth B], D [auth F], E, F [auth C], G [auth D], O [auth K], P [auth J], Q [auth I], R [auth L], S [auth M], T [auth H], U [auth N]	IPR027409	GroEL-like apical domain superfamily	Homologous Superfamily
A [auth G], B [auth A], C [auth B], D [auth F], E, A [auth G], B [auth A], C [auth B], D [auth F], E, F [auth C], G [auth D], O [auth K], P [auth J], Q [auth I], R [auth L], S [auth M], T [auth H], U [auth N]	IPR002423	Chaperonin Cpn60/GroEL/TCP-1 family	Family