Download MendeleyCrystal structure of yeast primase catalytic subunit
Park, K.R., An, J.Y., Lee, Y., Youn, H.S., Lee, J.G., Kang, J.Y., Kim, T.G., Lim, J.J., Eom, S.H., Wang, J.To be published.
4MM2
Crystal structure of yeast primase catalytic subunit
- PDB DOI: 10.2210/pdb4MM2/pdb
- Classification: REPLICATION
- Organism(s): Saccharomyces cerevisiae S288C
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-09-07 Released: 2014-09-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.293
- R-Value Work: 0.255
- R-Value Observed: 0.257
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA primase small subunit | A, B | 414 | Saccharomyces cerevisiae S288C | Mutation(s): 0 Gene Names: PRI1, YIR008C, YIB8C EC: 2.7.7 |  |
UniProt | |||||
Find proteins for P10363 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10363 Go to UniProtKB: P10363 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P10363 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | H [auth A], N [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | Ligand Interaction | |
| CD Query on CD | C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.293
- R-Value Work: 0.255
- R-Value Observed: 0.257
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.37 | α = 90 |
| b = 196.04 | β = 114.72 |
| c = 53.96 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
Entry History
Deposition Data
- Deposited Date: 2013-09-07
- Released Date: 2014-09-10 Deposition Author(s): Park, K.R., An, J.Y., Lee, Y., Youn, H.S., Lee, J.G., Kang, J.Y., Kim, T.G., Lim, J.J., Eom, S.H., Wang, J.
Revision History (Full details and data files)
- Version 1.0: 2014-09-10
Type: Initial release - Version 1.1: 2019-12-04
Changes: Data collection, Database references, Refinement description - Version 1.2: 2019-12-18
Changes: Data collection
