4M1X | pdb_00004m1x

Tetrameric ring structure of 201phi2-1p060 from Pseudomonas phage 201phi2-1

PDB DOI: https://doi.org/10.2210/pdb4M1X/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Pseudomonas phage 201phi2-1
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2013-08-04 Released: 2014-08-06
Deposition Author(s): Partridge, J.R., Zehr, E.A., Agard, D.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free:
0.144 (Depositor), 0.151 (DCC)
R-Value Work:
0.119 (Depositor), 0.127 (DCC)
R-Value Observed:
0.120 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Tetrameric ring structure of 201phi2-1p060 from Pseudomonas phage 201phi2-1

Partridge, J.R., Zehr, E.A., Agard, D.A.

To be published.

Macromolecule Content

Total Structure Weight: 46.28 kDa
Atom Count: 3,032
Modeled Residue Count: 289
Deposited Residue Count: 396
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein 201phi2-1p060	A, B, C, D	99	Pseudomonas phage 201phi2-1	Mutation(s): 0
UniProt
Find proteins for B3FK35 (Pseudomonas phage 201phi2-1) Explore B3FK35 Go to UniProtKB: B3FK35
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B3FK35
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download:Ideal Coordinates CCD File SDF format, chain E [auth D] MOL2 format, chain E [auth D] mmCIF format, chain E [auth D]	E [auth D]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain E [auth D] Interactions & Density Focus chain E [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.144 (Depositor), 0.151 (DCC)
R-Value Work: 0.119 (Depositor), 0.127 (DCC)
R-Value Observed: 0.120 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.098	α = 90
b = 52.672	β = 90
c = 62.302	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
SOLVE	phasing
PHENIX	refinement
HKL-2000	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-08-06

Deposition Author(s):

Partridge, J.R.

Revision History (Full details and data files)

Version 1.0: 2014-08-06
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.